Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01243 ATGGCTTTGATTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGTTACCCACCACCTGTTTTGTCTTCATCTTCATCACCATACCCTGGTGCTGCTTTTCACAAGGAAACAACAATGTCTTCTTCTTCTTCTTCAACACCTTCTTCATCTTCTGGTACTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTCTTTTTTTCATTTCTGGTTTGCTCCACTTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTGTTCAATCTAATAGACACCAGGAAATTTCCACTTCTGATGCTCTCCAGAGACAGCTTCAACAGCTCTTCCATCTCCATGATTCTGGTTTGGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAATTCAAGGAGATTGTGGGCCTGAAAGAGCCATTTGATTGTGCTGTTTGTTTGTGTGAGTTTTCTGAAAAGGATAAGCTCAGGTTGCTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGACACATGGCTATTGTCAAATTCCACATGCCCTCTTTGTAGAGGAACACTTCTTACTCCAGGATTTTCTATGGAAAACCCAATATTTGATTTTGATGATCTGAGGGAAGATGAAGGGTGCCCTTGTAATGGGGAAAATGGATTCAATACTAGACAAAAAGCAGTTGTTGTTGAAGAAACTAAAGAGAAAGGAGTTGTCCCTGTAAGACTTGGTAAATTCAAAAAGCTAAATGTGGTGGAGGATGGAGAGAAGGAAGTAGGAGAAACAAGTAGCAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGATCTTACCAATATGTGGTTGGCAATTCAGACCTCAGGGTAACCTTGAATCATGACCATAAAGGTAATCATGATTCAAGGCTCACCAGAGGAACTGAAAATGCTGAGAAGCTTTCATTGGAAGGGGATGTGGAGGCAAAGAAGATTAGTAGTGTCAGCAAAGGTGACAGCTTTTCTATATCCAAAATCTGGTTGTGGCCAAAGAAGGGAAAATTTTCTGGCTCTTTGGAGTCTCAAATAGGCATGCCATCATCTTATCTTAATACAGACTTGCATGGGATGAGGGAAACAGAAGGGCCATGA 1137 0.4019 MALIKHQIQQKDGYLSYPPPVLSSSSSPYPGAAFHKETTMSSSSSSTPSSSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASVQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSMENPIFDFDDLREDEGCPCNGENGFNTRQKAVVVEETKEKGVVPVRLGKFKKLNVVEDGEKEVGETSSSNLDARRCFSMGSYQYVVGNSDLRVTLNHDHKGNHDSRLTRGTENAEKLSLEGDVEAKKISSVSKGDSFSISKIWLWPKKGKFSGSLESQIGMPSSYLNTDLHGMRETEGP* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01243 378 Pfam Ring finger domain 147 190 IPR001841 -
Rops5g01243 378 MobiDBLite consensus disorder prediction 33 54 - -
Rops5g01243 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 342 - -
Rops5g01243 378 SMART ring_2 148 189 IPR001841 -
Rops5g01243 378 SUPERFAMILY RING/U-box 127 196 - -
Rops5g01243 378 CDD RING-H2_EL5-like 147 190 - -
Rops5g01243 378 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Rops5g01243 378 FunFam RING-H2 finger protein ATL46 110 195 - -
Rops5g01243 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01243 Rops-Chr5 26493809 26495984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01243 45 353 C3H Transcription Factor Family AT2G18650 42.183 2.30e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01243 - - gmx:100806337 555.058