Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01239 ATGGCTTTTTGGAATTGGAATAGAACTGTGTTTCCAACTTCCATCTTGTTTATTTGCATCTTCATTCTGATCACCACTGCCAAGGATGCAACTTCCTGGACTTTGGATGCAGAATGCAACCTTAGAATTCAACTTTCACCATTGTTGAATGATTCAAGTTGTGAAGAGCGAGGTTGGCATGAGTTCCTGCACAGCAAGTGTTGTGGAGTAGCACTTGATGCTTACCTCTATGCACTGGCTCAGCAAGCAAATCAAACAGGAAAGATTTTCTTGGATTCTACTGAGCAAAGAAATTGTCTTTCTAGAATAAAGAGTTTTAAAGATAATAATTTTGGTTGTGGAATTGAGAACATAACAAGTGGCAATGGTGGATGTTCCAACTTCTGGGTTGATGATGTTAGGAATAAATTAGGAAATGATCTTAGAAGTTTAGATGAAAACTGTGAACTTAAGACTTTAGGTAACAAGTGGGAACAATCATGTTCTTCCTGCCTGAGGACCTGGAAAACCATAGGAGGGACAGATTCCAGAAAGACCAGTATCAAAGCTGAAAAAACTGAAGCTGATCTTTGTAAATTTGCTATACTTGTGACATTGATAAGCAGAAAAATTGAAGATGAGATGTATGTCAACACAGTCTTGAGATGCCTTGGAACACAACATATTTATTTAGAAAATCAAACCGCTGAAGGCAATCAGAATATGAAGAGTAATAGAGTTGCTAATAGAGGTACATGGATTCTGGCTGGAGCAATACTAGTGGTTATTCTGACAATAGTTATCATTGCATACATCATGTTTTGTAAATGCTTCAAATCAGCCCCACCAAAAAATGAAGTAAAATTTGGAGACATGTTAAAGAAAACTGCTTGTCCAAGAGTTTCAATCAAGGAAGTGTACGCTGCCACTAACCATCTGAACGAAATGAGTATCATTGGAGAAGGGACTGCAGGTAAGGTCTATAAAGGCACAATGACAAATAAACAGCAAGTTGCAATAAAGCACATAATCAATGATGATGGGAATATGGAGACTTTTGTTAGAGAAGTTACTAGCCTATCTCATGTCAGGCACCCAAATCTTGTTGCTTTGTTGGGTTGCTGTGTTGAGGGAGATGAATGTTTTCTTATCTATGAACTATGTCCCAATGGGAGTCTTTCAGAGTGGCTATTTGGTAAGAATAGTAGGGTGCTGTCCTGGATACAAAGGCTAGAAATTGCAATTGATGGTGCTCGAGCTCTTTGGTTTCTACACACGTTTCCAGGAGGATGCATTGTTCACCGTGATATCAAGCCAACAAATATTCTTCTTGGGTCTAAATTTGAGGCAAAGCTATCAGATTTTGGACTGTCTAAGGTAATTGAAGTTGGTGAAACATATGTTAGTTCAGAGGTGAGAGGAACTTTTGGATACGTTGATCCTGAGTACCAAAGCAACCACCATGTGAATTCATCTGGTGATGTTTACAGCTATGGCATGGTACTTCTACAAATCCTCTCTGGAAAGAGGGTCATAAATTTGAAACTGAAGACACCAATGTTACTAAGTAAAATGGCAAAAGCACTTACCAGGATTACTGAATTTGCTGATCCTAAACTTCAAGGAGAGTACTCTGAGGAAGCATTTGATTTTACACTTCAGTTGGCTCTTTCATGCACAGCCCTCAACCAACAACGACCATCAATGGAGCAGGTTGTCAAAAGACTAGAAGAGGCCTTATTAATTTCAAAAGGGAGGAAGGTTTCTACTACAGAAACTCCAGCAGACAATATTTCTAATGATCCATGA 1788 0.3876 MAFWNWNRTVFPTSILFICIFILITTAKDATSWTLDAECNLRIQLSPLLNDSSCEERGWHEFLHSKCCGVALDAYLYALAQQANQTGKIFLDSTEQRNCLSRIKSFKDNNFGCGIENITSGNGGCSNFWVDDVRNKLGNDLRSLDENCELKTLGNKWEQSCSSCLRTWKTIGGTDSRKTSIKAEKTEADLCKFAILVTLISRKIEDEMYVNTVLRCLGTQHIYLENQTAEGNQNMKSNRVANRGTWILAGAILVVILTIVIIAYIMFCKCFKSAPPKNEVKFGDMLKKTACPRVSIKEVYAATNHLNEMSIIGEGTAGKVYKGTMTNKQQVAIKHIINDDGNMETFVREVTSLSHVRHPNLVALLGCCVEGDECFLIYELCPNGSLSEWLFGKNSRVLSWIQRLEIAIDGARALWFLHTFPGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEVGETYVSSEVRGTFGYVDPEYQSNHHVNSSGDVYSYGMVLLQILSGKRVINLKLKTPMLLSKMAKALTRITEFADPKLQGEYSEEAFDFTLQLALSCTALNQQRPSMEQVVKRLEEALLISKGRKVSTTETPADNISNDP* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01239 595 Gene3D Transferase(Phosphotransferase) domain 1 381 587 - -
Rops5g01239 595 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 155 571 - -
Rops5g01239 595 SMART serkin_6 306 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01239 595 Coils Coil 552 572 - -
Rops5g01239 595 Pfam Protein kinase domain 308 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01239 595 Gene3D Phosphorylase Kinase; domain 1 271 380 - -
Rops5g01239 595 ProSiteProfiles Protein kinase domain profile. 306 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01239 595 Pfam SPARK 38 177 IPR043891 -
Rops5g01239 595 SUPERFAMILY Protein kinase-like (PK-like) 289 570 IPR011009 -
Rops5g01239 595 FunFam probable receptor-like protein kinase At5g59700 381 587 - -
Rops5g01239 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01239 Rops-Chr5 26414757 26418281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01239 253 570 Receptor kinase-like Gene Family AT1G53420 37.690 2.69e-57 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Rops5g01239 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01239 - - aprc:113867593 920.228