Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01237 ATGGTTGAGGGGGGTACACATGGGAACAGAAGCATGTCCATAAATGACTTGGAGCAGCTTCCATGCTATGATTATGTTGCCAATGACAGTGCAAGCAACCCTGTGATTTGTGCAATTTGTTTGGAGAACCTCACTATGGGGGATAAGTGCAGATTGTTACCTATATGCAATCACAGTTTTCATGCCAAATGTGTGGACACATGGCTTCTAGAGAGACCCTTTTGTCCAATTTGCCGATCCAGTGCTAATTCTCATAGTGGAAACCAAGTTATATTGTAG 279 0.4301 MVEGGTHGNRSMSINDLEQLPCYDYVANDSASNPVICAICLENLTMGDKCRLLPICNHSFHAKCVDTWLLERPFCPICRSSANSHSGNQVIL* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01237 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 88 IPR013083 -
Rops5g01237 92 SUPERFAMILY RING/U-box 27 85 - -
Rops5g01237 92 Pfam Ring finger domain 37 79 IPR001841 -
Rops5g01237 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 85 - -
Rops5g01237 92 SMART ring_2 37 78 IPR001841 -
Rops5g01237 92 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01237 Rops-Chr5 26391359 26391637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01237 17 81 C3H Transcription Factor Family AT3G10910 46.154 5.58e-16 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01237 - K15692 lang:109353575 148.673