Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01234 ATGGAACTCACCGATTCCACCGCCGGCGACAAGAACCACGAATCGACGTCGTTTCACAGAGACAAAGACAAAGACTCTCGCTCCTTTCTAGGAATCGACCTCAACGAGATCCCTTCTCCTTCTTCTTCCTTTGCTGAAACCCTACCGGACTCCGCCGTCGACATCGTCCGCGCTTATCACGAGAATCCTGCTCCACCTCCTGGAGGTCCTGCGGTTCTCCCTGGTGGTTTTACTCCATGCGCCGCCTGTGCTGGTGGTGGCGGAGGGAGCGGTTTTCTTGTCTGTGATGGCTGTGAGCGTGGTTTCCACATGGCATGTGCAGGGATTCGCAGCGGCGGTCGTCAGGTTGGGAACCTTGATGAGTGGGTTTGTGGCGAGTGTGTCTCCGGCGGGGTGAAGAGTAAGCGGTGGCCGTTGGGTGTGAAGAGTAAGCAGCTTCTTGATATCAACGCTTCCCCGCCGAGTGATGCCGACGGTGATGGTGGTGGTGAGGAGTTGCAAGATTCGAGAAAGCACACTCTGGGTGATAAATCTTTTGGTGCCAATCCTTTTGGTGCCCCAGTGACGTATTCAAACTTCTACAACGGGAGTGCTTTTGGCTTCCAAAGGGCATCTGGAGTTGTGACGCATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATAGCCAATCAATGACTAGAAGTTTTGAGGAGGCTCTTAGAGATTTTATATCTGAAAGGCGTGGCGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAATGAGCAGCTCTGAATTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGACTATCATCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAAAGGTCTCTCCCTTCTTTTGGTGGGCCTCACCTATCCAGAAAAAGAAAGTCAGCTAGAACTCTAGTTGCCAATGGTTTTGCGGAAAAGCGGGGAACCTCAACCAATAGTAATTGTAAGGATCCTCCTTCTGATGGTTTAAGCATGGAATGTGCTAGTGCTCGGGGGAATGTCCCAAAAGCCACTGACATTGGAAATAAAGAGGATGGTCACACTCTTCCTCAGCAATCTGCTGATGTACTCCCTCTACAGTTCGAGGACTTCTTTGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTAGGCTATAAATCTTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAGGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCAGAAGGTGTTCCTGTTCAGAGTTTCCTGTTCCAGTTGGGTCAACCATCCTCTCAATATCAAGTCTTTGTCAGTTCATGAGTCAAACCAATGAAAAAGGTGAGAGAAAGACTAATGGTAGTATGGATTTAGATGGTGATGAAAGTATCCAAATGATGCTTTTAGACCCTTGTGTGCCAACGGAAAATGATGTCTTAAGTTGTGTTGCAAGTTGCTCAAATGAAGCATATAATAGTCATGCATCAGATGTATCACAGCCTGTTGCTGGTTCAGTTCAACATAATACTAGAAATTTGTTAGCTGATAACATGGGTTTTATTGATGTGATTGGTGAAATTTTGGTGGAAGAGCAATCGTCATTCTCAGCATGGAGAGTTATTTCTCAAAAGTTAGTCAATGCTTGCAAGGATATCTGCGAGCAGAAAGGAACTCTCAAATTCTATTGTAAACATGTTGAAAATGAAACATGCTCACATAAATGGGATTTAAGGAATGGAAAAAGTGATACACACTTCACTTCATTGGATAAATTTTGTGGCTCACTTGGTTCAGTGAGCATTCCAGATGTAATTTATGCAGACAATGATCTGAAAGGTCTCTACGAGGTGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGGTTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGTGTTCCAGACTCTTTGCAGTATGAACTTCTGAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTAGAAAATGGTTTCCTAGTGGTTGATTGGAGAGGTGGATCAAAATATGATGAAGAAGAAGCAGTTCAAGGTTTATATAGGAGGCCCAAGAAGGTGAGGATGACTGAAAAATGTGTTGAGGAAGATCGTTGTCCGCCTCCTGGGAAACCACTATGCTCTAGGGCTCCTAGTGAACTCATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAGAGCGATTTCGGGAAATTCTGGACCTGAAAGAGCCATTGTCATTAGATGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGGATTGGATTTTCTTGAGAATTCTGAGAAGGAAATGGATGGCAGTCAAGTTTTAAGTCTACATGGAGATGATAGTAATTGCAGACCATTGTCCCCAAGATGTGAAGCTGGTCCATCAGGTTCCACAGAAAGTTCACACGCTTTTATTCAAGTAGAAACAGAAGCAATGAAAGAGGCTGCTCAAGTTAAGCTCGCTTCTTTCACTTATGCCAGATGCTTTGGTGTAGCTTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGAGGAAGAAGGAAAGATATAGATAGTGCAGTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTAACTTGGCCAGAATTAGCTCGTAGATATATATTGGCTTTCTTATCAATGGATGGTAATCTTGAGTCTGCAGATATTACTGCTCGTGAAAGTAGTAAAGTATTTCGTTGCTTACGAGGTGATGGAGGTTTGCTGTGTGGTTCCCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACTGTTGCTTGCGGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCAGAGAAAATGATGTACTAACCATGGAAGAAGAGGAGTCTGATGCAAAGGGTGATTCTGAAAAGAATTTGGCGAATCATGGTAGTATTCCTGAATGGGCGAAATTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACTCGAATCAGGAACTGTGTGAAAGAGGCTCTAGAAAAGGATCCACCAGAGTGGGCGAGGAAAAAACTGGAGCATTCAATCAGCAAGGAAGTGTACAAGGGAAATGCATCTGGACCAACGAAGAAAGCAGTTCTTTCAGTGTTGGCTGAGGTAGTTGGTGAAGGATTACAACCGAATCCCAATAAAGGAAGGAAAAAGAAGATTGCTATTTCTATTTCTGACTTTATCATGAAACAATGTCGCATTGTATTACGTCGTGCAGCTGCCGCAGATGATTCAAAGGTTTTCTGCAATTTGCTAGGAAGAAACTTAATGAATTCTTCGGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTATTGACCTAAGATTGGCTTCTGGAGCTTATGGTGGATCCCATGAAGCTTTTCTTGAGGATGTACGTGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGATCTGGCTGAAAAATTATCCCAGAATTTTGAATCATTGTATATTGAAGAGGTTGTCACCTTTGTCAAAAAATTTGTGGAGTATGGTAAACTGGAATGCTTAAGTGTGGAAATGAAAAAAGAAGTTGACGAATTTATTGTGTCAACAAGTGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTGCTATGTGATACTTGCGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTCTTGATGGTAAACATGCAACTCAAGATGTCACGGAACGTTCACTGATTATTGGCAAACGTCGAAGTAAAAAATTCCAGGGAGAAGCTAAATGTCTTTACTTGGAAGCTCTAGCTCATTTATCAGCTGTAATGGAAGAAAAAGAATACTGGGAGTACAGTGTGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGATACGCCAGCACCTTGAGCAATGTACAGATTTGTCTGTTGAGTTACATCAGAGATTGCGTACACTATCTGTAGAGTGGAAAAACCTGAAAACTAAAGAAGATAGTTTATCCACAAAAGCTGCAAAAATTGATACATTCTCACTAAATACTGCTGCTGGAGAAGTTGGTCTTAAGGAAGGATTGACAACTTTGTCCTCAAATACTGGTAAATGTCTGGTGCAGCCCCTTACTGCAGCTGACAATTCTGGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGACTACCAAAGAGAAGTATAGGTTCAATAGTGTTGATAAAAGCGTATCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGACAACATAGGAATGTTTCTGGGGCTGTTGAATCTCAATGTACTGATAAGTCCCCTAAGTATTTTCCATCACCAAGTCATATGCCACAAGACACAAATGGTTCTGGTGGAGCAGCTCACATCCAGTGTAATCACCAGAAATGTGAGGGAAGGGATATATCTACTCTTGTGACATACCAGCAAGGACAACGTGTGCCTGTTGAAGTTCCTCAGACTGCTGTTAATGAGTCAGAACCCTACCAGCTTGAGCTCAATGCCATTCGGCAGGATATTTCACTACTGCAGGACTCCATAACTAGTGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCATTGGTCGACTGTACTGGGCTATGGTTACATCCAGGGGACGTTCGCGTATAGTTGTTGATGCAAGCGCTTTACTGCTGCATGGAAGAGGAATGGCAGCTGGCAAAGACTCTCTGGAGAATGTTTCTGCTCTGCAGCATGGTGCACTATCTTATAAGGATAACTATAAGATGTTAGGGGTGTTCAAGGACTCCTCTCCTTCAATGTCTCAACCAAGTAATGCTTTGGGCAATAGTTCACCATGGATTGCTTATGAAAATGATGCAGAAATTGAAGGGCTTTTAGGTTGGCTAAATGATGATGACCCTAAAGAAAGAGAACTGAAGGATTCCATTATGCTGGGGCCAAAATCAAGATTTCAAGAGTTTATTAATGCACAGACTGAAGGTCAGGTTAAGGACCAAGGACATATCTCTATGCCAAGAAATAGAGAGAAAATGGTATCTAGTTCTCTTGTTACGAAGGCCACTTCCTTGCTGGAAAAGAAATATGGTCCCTTCTTTGAGGTGTCGAAGAAGCAAAGTAAAAAGGCCAGAGCAACTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTCTAGGAAACACTGCATGTATTGCCACAAAACTGTTCTGAGTGATATTGAATTTGTGGGGCACAATGATGGCAAATGTAATGCGGGTCTTCTGGCTTTGGAGAAGAATAAGGATAAAAATGGATCTTCCAAAGGAAAAGGGAACTTGAAATGTGACCCCTCACTTGAAAAATTCAGAGCTAATGGAGAAACGGATGGAACCTCAATTAATGGACGTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACCTGCCCGTTTAACTTTGAAGATATATGTTTGAAGCTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGGATCCCGTCCTTTGTTCCTTCCATATCTCCTTTTGTTAGTGATTATATACCATTGTCAGCTCAAAAGGATGATAGGGTTGTTGGTGGTGCATCCCTAGCTTCAGAAAGCCAGGTTTGTCAGGGAAACATGGATGGAGCTGGCGACCATAAATCAGGCATTTCTACTGAAAGGTTAGCTTCAAATGAAAGCAATAATGCAGGAAAATCCAACAAGTCATCTTTGGGAGTACAAAGAGATGGAAAGTTTTCTTTTTGTAGTCCTGCTTCAGATATGGGAGTTGATGGCTGCTGTGTGGTCCCTTCGTCTTCCTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTGAGGCAATTGAAGATTAATATACTTGATATGGATGCTGCACTCCTGAATGTTGCTCTAAGATCATCAAAGGCACAGTCAGACAGAAGACAGGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTACACTGGAGGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCGTTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTGCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAATGCCCAATTCAAGTCTTACTGACAGCTCTGAACATTCTGCCATAGTGGAACAGAAACTGCCAATTGCTGTTGATGCAGAGAAATCCAAAGCAAGCCGGAAGTCGAACAGGAAAAGGAAGGAACCAGATGGTTGA 6648 0.4263 MELTDSTAGDKNHESTSFHRDKDKDSRSFLGIDLNEIPSPSSSFAETLPDSAVDIVRAYHENPAPPPGGPAVLPGGFTPCAACAGGGGGSGFLVCDGCERGFHMACAGIRSGGRQVGNLDEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEELQDSRKHTLGDKSFGANPFGAPVTYSNFYNGSAFGFQRASGVVTHAVRVGFEDILNHSQSMTRSFEEALRDFISERRGVLEEGWRVEFRQSMSSSELYAVYCAPDGKIFDSVYEVACYLGLSSGYNSMESEIRNERSLPSFGGPHLSRKRKSARTLVANGFAEKRGTSTNSNCKDPPSDGLSMECASARGNVPKATDIGNKEDGHTLPQQSADVLPLQFEDFFVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSISSLCQFMSQTNEKGERKTNGSMDLDGDESIQMMLLDPCVPTENDVLSCVASCSNEAYNSHASDVSQPVAGSVQHNTRNLLADNMGFIDVIGEILVEEQSSFSAWRVISQKLVNACKDICEQKGTLKFYCKHVENETCSHKWDLRNGKSDTHFTSLDKFCGSLGSVSIPDVIYADNDLKGLYEVLGKWLEQDRFGLDVEFVQEVLEQLPGVPDSLQYELLNSRSNSSSLPTVENGFLVVDWRGGSKYDEEEAVQGLYRRPKKVRMTEKCVEEDRCPPPGKPLCSRAPSELIGDIFQAWELLERFREILDLKEPLSLDELEKELINPWFDGLDFLENSEKEMDGSQVLSLHGDDSNCRPLSPRCEAGPSGSTESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRTKLNMLPINELTWPELARRYILAFLSMDGNLESADITARESSKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEEESDAKGDSEKNLANHGSIPEWAKLLEPVRKLPTNVGTRIRNCVKEALEKDPPEWARKKLEHSISKEVYKGNASGPTKKAVLSVLAEVVGEGLQPNPNKGRKKKIAISISDFIMKQCRIVLRRAAAADDSKVFCNLLGRNLMNSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLVDLAEKLSQNFESLYIEEVVTFVKKFVEYGKLECLSVEMKKEVDEFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCLDGKHATQDVTERSLIIGKRRSKKFQGEAKCLYLEALAHLSAVMEEKEYWEYSVGERTFLLKFLCDELLNSSLIRQHLEQCTDLSVELHQRLRTLSVEWKNLKTKEDSLSTKAAKIDTFSLNTAAGEVGLKEGLTTLSSNTGKCLVQPLTAADNSGNFGVFVDSLPSEETTKEKYRFNSVDKSVSVTNSDSDSQNMNSIDVEGQHRNVSGAVESQCTDKSPKYFPSPSHMPQDTNGSGGAAHIQCNHQKCEGRDISTLVTYQQGQRVPVEVPQTAVNESEPYQLELNAIRQDISLLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWAMVTSRGRSRIVVDASALLLHGRGMAAGKDSLENVSALQHGALSYKDNYKMLGVFKDSSPSMSQPSNALGNSSPWIAYENDAEIEGLLGWLNDDDPKERELKDSIMLGPKSRFQEFINAQTEGQVKDQGHISMPRNREKMVSSSLVTKATSLLEKKYGPFFEVSKKQSKKARATNDEKLYRCECLEPIWPSRKHCMYCHKTVLSDIEFVGHNDGKCNAGLLALEKNKDKNGSSKGKGNLKCDPSLEKFRANGETDGTSINGRSKLSSRLIKFSNEESTCPFNFEDICLKLVTNDSNKELVREIGLIGSDGIPSFVPSISPFVSDYIPLSAQKDDRVVGGASLASESQVCQGNMDGAGDHKSGISTERLASNESNNAGKSNKSSLGVQRDGKFSFCSPASDMGVDGCCVVPSSSLRPLVGKVSHILRQLKINILDMDAALLNVALRSSKAQSDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIIYEKMPNSSLTDSSEHSAIVEQKLPIAVDAEKSKASRKSNRKRKEPDG* 2216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01234 2215 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 235 302 IPR001739 GO:0003677
Rops5g01234 2215 ProSiteProfiles Zinc finger PHD-type profile. 1274 1324 IPR019787 -
Rops5g01234 2215 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1356 1400 IPR028942 -
Rops5g01234 2215 ProSiteProfiles Zinc finger PHD-type profile. 77 130 IPR019787 -
Rops5g01234 2215 Pfam Methyl-CpG binding domain 236 289 IPR001739 GO:0003677
Rops5g01234 2215 Pfam Bromodomain 1165 1220 IPR001487 GO:0005515
Rops5g01234 2215 MobiDBLite consensus disorder prediction 1 24 - -
Rops5g01234 2215 ProSiteProfiles Bromodomain profile. 1167 1215 IPR001487 GO:0005515
Rops5g01234 2215 SUPERFAMILY Bromodomain 1111 1229 IPR036427 GO:0005515
Rops5g01234 2215 ProSiteProfiles FYR domain FYRN motif profile. 379 432 IPR003888 GO:0005634
Rops5g01234 2215 SUPERFAMILY FYVE/PHD zinc finger 1262 1326 IPR011011 -
Rops5g01234 2215 PANTHER OS02G0192300 PROTEIN 21 2211 - -
Rops5g01234 2215 MobiDBLite consensus disorder prediction 148 170 - -
Rops5g01234 2215 Pfam PHD-finger 80 128 IPR019787 -
Rops5g01234 2215 Pfam PHD-finger 1276 1322 IPR019787 -
Rops5g01234 2215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 129 IPR013083 -
Rops5g01234 2215 ProSitePatterns Zinc finger PHD-type signature. 80 127 IPR019786 -
Rops5g01234 2215 SUPERFAMILY FYVE/PHD zinc finger 78 138 IPR011011 -
Rops5g01234 2215 MobiDBLite consensus disorder prediction 1532 1562 - -
Rops5g01234 2215 Gene3D - 1117 1239 IPR036427 GO:0005515
Rops5g01234 2215 ProSitePatterns Zinc finger PHD-type signature. 1277 1321 IPR019786 -
Rops5g01234 2215 SMART PHD_3 1276 1322 IPR001965 -
Rops5g01234 2215 SMART PHD_3 79 128 IPR001965 -
Rops5g01234 2215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1263 1341 IPR013083 -
Rops5g01234 2215 CDD PHD1_Lid2p_like 1276 1321 - -
Rops5g01234 2215 Gene3D - 380 490 - -
Rops5g01234 2215 SUPERFAMILY DNA-binding domain 235 288 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01234 1 2215 C2H2 Transcription Factor Family AT3G01460 45.088 0.0 1744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops5g01234 Bromodomain 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01234 K22768 - gmx:100820223 3397.06