Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01233 ATGGAATCTACACGTCTTTACTTTGATAACTCTGTTTGTCGTGGGAACAACAACATGAACATGCTATTCCTTGGGAATGCTGATCTCGGTTTTCGAGGAAGATCAATGATGAGCATGGAGGAAGGCTCAAAGAGGCGACCTTTCTTCAGTTCACCGGATGAACTGTTTGATGAGGAGTATTATGAGGAGCAGTTGCCAGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACTCAGTTGGCCAAGAAGCTGGGGCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGTAGGGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTATGATGTTCTCAAGGCTTCTTATGATTCCTTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAGACACTCAAATCTGAGGTGGTATCCTTGAATGAGAAGCTTCAAGTTCAAGCTAAAGAGATGCCAGGAGAACCATTATCTGACAAGAAAGATGATCCACTTCCAGTAGATATAGCTCAAATTTTCAGCATGAAGGTGGAGGACCACATGAGTTCTGGGAGTGTTGGAAGTGCTGTGGTGGATGAGGGTAGTCCCCAGCTTGTTGTTGACAGTGTGGATTCATATTTTCCAGCTGAAAATTATGGTGGATGCATGGCACCTGTTGAAAGGGTTCAGTCAGAGGATGATGATGGGAGTGATGATGGGAGGAGTTACTTGGATGTGTTTGTGGCATCTGAAACTGAGCAGCAAAACCATGAGGAGGGAGAGGCATTGAATTGGTGGTGTAATATGTATTATGTTGCTTAA 858 0.4545 MESTRLYFDNSVCRGNNNMNMLFLGNADLGFRGRSMMSMEEGSKRRPFFSSPDELFDEEYYEEQLPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIVKENETLKSEVVSLNEKLQVQAKEMPGEPLSDKKDDPLPVDIAQIFSMKVEDHMSSGSVGSAVVDEGSPQLVVDSVDSYFPAENYGGCMAPVERVQSEDDDGSDDGRSYLDVFVASETEQQNHEEGEALNWWCNMYYVA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01233 285 SMART HOX_1 66 127 IPR001356 GO:0003677
Rops5g01233 285 CDD homeodomain 68 124 IPR001356 GO:0003677
Rops5g01233 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 207 IPR045224 GO:0003700
Rops5g01233 285 Gene3D - 61 129 - -
Rops5g01233 285 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Rops5g01233 285 SUPERFAMILY Homeodomain-like 62 125 IPR009057 -
Rops5g01233 285 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Rops5g01233 285 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Rops5g01233 285 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Rops5g01233 285 Coils Coil 143 170 - -
Rops5g01233 285 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Rops5g01233 285 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Rops5g01233 285 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01233 Rops-Chr5 26347002 26350321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01233 1 278 Homeobox Transcription Factor Family AT3G01470 58.451 1.55e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops5g01233 Homeodomain 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01233 K09338 - gmx:100797836 469.159