LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g01221	ATGGCATCTAACATCAAAGCTTGGGTGTACTCAGAATATGGAAACATAGAAGGTATTCTCAAATTTGATGCTAATGTGCCTATACCAGACATCAAGGAAGACCAGGTGTTCATCAAGGTTGTGGCTGCAGCCCTTAATCCTGTAGATTATAAGAGAGCTTTGGGGTATTTCAAGAACACTGACTCTCCTTTACCTACTGTTCCTGGGTATGATGTTGCTGGTGTGGTGGTCAAAGTTGGAAATCAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATTAGTGAGCATGCTATCAACCATCCAAAGACCATTGGTTCTTTGGCAGAGTATACTGTTGCTGAAGAGAAATTATTGGCTCACAAACCCTCCAACTTGAGCTTTGTTGAAGCTGCTGGCCTTCCTCTAGCCATAATCACTGCTTATCAAGGACTTGAAAAAGTTGAGTTTTCTTCTGGCAAGTCTATCCTTGTTCTTGGAGGTGCTGGAGGAGTTGGATCCCTTGTTATTCAGCTTGCCAAGCACGTTTTTGGTGCATCTAAGGTTGCAGCTACTGCTAGTACTGCTAAACTTGAATTGTTGAGGAACTTGGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTTTCAGAAAAGTTTGACGCAGTGTATGATGCAGTAGGGCAGAGTGAGAGGGCATTGAAGGCTGTTAAAGAAGGAGGCAAGGTTGTGACAATAGTGCCACCTGGTACTCCACCAGCTATCTCATTCATACTCACTTCAGATGGGGCAGTGTTAGAGAAACTACAACCTTACTTGGAGAATGGCAAAGTGAAGCCAGTACTGGACCCCAAGAGCCCCTTTCCATTTTCTAAGGTTGTGGAAGCATTTGCTTACTTGAAGACTAATAAAGCCATTGGGAAAGTAGTTGTACATCCCATCCCATAA	945	0.4265	MASNIKAWVYSEYGNIEGILKFDANVPIPDIKEDQVFIKVVAAALNPVDYKRALGYFKNTDSPLPTVPGYDVAGVVVKVGNQVKKFKVGDEVYGDISEHAINHPKTIGSLAEYTVAEEKLLAHKPSNLSFVEAAGLPLAIITAYQGLEKVEFSSGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTAKLELLRNLGADLPIDYTKENFEELSEKFDAVYDAVGQSERALKAVKEGGKVVTIVPPGTPPAISFILTSDGAVLEKLQPYLENGKVKPVLDPKSPFPFSKVVEAFAYLKTNKAIGKVVVHPIP*	315

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g01221	314	Gene3D	-	147	261	-	-
	Rops5g01221	314	PANTHER	NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC	2	314	IPR044626	GO:0016628
	Rops5g01221	314	SMART	PKS_ER_names_mod	18	310	IPR020843	GO:0016491
	Rops5g01221	314	Pfam	Zinc-binding dehydrogenase	199	310	-	-
	Rops5g01221	314	Gene3D	-	12	310	-	-
	Rops5g01221	314	ProSitePatterns	Quinone oxidoreductase / zeta-crystallin signature.	155	176	IPR002364	GO:0008270\|GO:0016491
	Rops5g01221	314	CDD	MDR_like_2	6	310	-	-
	Rops5g01221	314	Pfam	Alcohol dehydrogenase GroES-like domain	34	95	IPR013154	-
	Rops5g01221	314	SUPERFAMILY	GroES-like	5	162	IPR011032	-
	Rops5g01221	314	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	128	254	IPR036291	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g01221	Rops-Chr5	26149339	26151744	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g01221	33	251	Monolignol Biosynthesis Gene Families	AT4G37980	25.703	4.67e-07	48.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g01221	K18980		-	gmx:100791274	507.679

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