Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01221 ATGGCATCTAACATCAAAGCTTGGGTGTACTCAGAATATGGAAACATAGAAGGTATTCTCAAATTTGATGCTAATGTGCCTATACCAGACATCAAGGAAGACCAGGTGTTCATCAAGGTTGTGGCTGCAGCCCTTAATCCTGTAGATTATAAGAGAGCTTTGGGGTATTTCAAGAACACTGACTCTCCTTTACCTACTGTTCCTGGGTATGATGTTGCTGGTGTGGTGGTCAAAGTTGGAAATCAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATTAGTGAGCATGCTATCAACCATCCAAAGACCATTGGTTCTTTGGCAGAGTATACTGTTGCTGAAGAGAAATTATTGGCTCACAAACCCTCCAACTTGAGCTTTGTTGAAGCTGCTGGCCTTCCTCTAGCCATAATCACTGCTTATCAAGGACTTGAAAAAGTTGAGTTTTCTTCTGGCAAGTCTATCCTTGTTCTTGGAGGTGCTGGAGGAGTTGGATCCCTTGTTATTCAGCTTGCCAAGCACGTTTTTGGTGCATCTAAGGTTGCAGCTACTGCTAGTACTGCTAAACTTGAATTGTTGAGGAACTTGGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTTTCAGAAAAGTTTGACGCAGTGTATGATGCAGTAGGGCAGAGTGAGAGGGCATTGAAGGCTGTTAAAGAAGGAGGCAAGGTTGTGACAATAGTGCCACCTGGTACTCCACCAGCTATCTCATTCATACTCACTTCAGATGGGGCAGTGTTAGAGAAACTACAACCTTACTTGGAGAATGGCAAAGTGAAGCCAGTACTGGACCCCAAGAGCCCCTTTCCATTTTCTAAGGTTGTGGAAGCATTTGCTTACTTGAAGACTAATAAAGCCATTGGGAAAGTAGTTGTACATCCCATCCCATAA 945 0.4265 MASNIKAWVYSEYGNIEGILKFDANVPIPDIKEDQVFIKVVAAALNPVDYKRALGYFKNTDSPLPTVPGYDVAGVVVKVGNQVKKFKVGDEVYGDISEHAINHPKTIGSLAEYTVAEEKLLAHKPSNLSFVEAAGLPLAIITAYQGLEKVEFSSGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTAKLELLRNLGADLPIDYTKENFEELSEKFDAVYDAVGQSERALKAVKEGGKVVTIVPPGTPPAISFILTSDGAVLEKLQPYLENGKVKPVLDPKSPFPFSKVVEAFAYLKTNKAIGKVVVHPIP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01221 314 Gene3D - 147 261 - -
Rops5g01221 314 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 314 IPR044626 GO:0016628
Rops5g01221 314 SMART PKS_ER_names_mod 18 310 IPR020843 GO:0016491
Rops5g01221 314 Pfam Zinc-binding dehydrogenase 199 310 - -
Rops5g01221 314 Gene3D - 12 310 - -
Rops5g01221 314 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 155 176 IPR002364 GO:0008270|GO:0016491
Rops5g01221 314 CDD MDR_like_2 6 310 - -
Rops5g01221 314 Pfam Alcohol dehydrogenase GroES-like domain 34 95 IPR013154 -
Rops5g01221 314 SUPERFAMILY GroES-like 5 162 IPR011032 -
Rops5g01221 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 128 254 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01221 Rops-Chr5 26149339 26151744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01221 33 251 Monolignol Biosynthesis Gene Families AT4G37980 25.703 4.67e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01221 K18980 - gmx:100791274 507.679