Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01217 ATGGTATTGTCACTGTTATCTCCAAACCAAACAAACACCATGAACACTCTCTATAAGCTTCTTGATGGCCATGTTTCATGGAATATGGACTCAAACCCATGTGCATGGAAGGGAGTGACTTGTGACCGTAGCAATTCCTCTGTAATACAGATTGCTTTCAATGGTTATTCACTCTCTTCTTCTGACTTTCTGCCTGTTCTTTGCCAAATTGATACTCTGGAGCATCTTGATGTCTCCAACAACCATCTGAGCTCAATCCCAGATGATTTCATCACTGAGTGTGGAAAGAACAAGGGGTTGAAGCTTCTGAATTTTACTGGAAACAAGTTACAAGGTGCTTTACCTACTTTTCATGGTTTTGATGGATTGGAATATCTGGATATGTCTTTCAATAAGTTGGGAGGGAACATTAGTTCTGAGTTAGATGGATTGGTTAGCCTCAAGAGTTTGAATCTTAGTTTCAATTCCTTTAATGGGTTTCTCCCTACCAACCTGGGAAAGTCCATGGTTTTGGAGCACCTTGTGCTTTCTGCCAATCGGTTTCATGGAAAAATCCCTGATGAAATACTGAGTTATGAAAGTTTGACTAAGATTGATCTTAGTGTAAATAATCTTTCAGGGTCTATTCCTAGCAATATTGGGAAGCTATCTAAATTAAATATTTTGCTCCTTTCCTCTAATAACCTCACTGGTCAAATCCCAACATCACTTATGAAAATCACGACCCTTACAAGATTTGCATCAAATCAGAACAATTTCAATGGTTCTGTACCTAGTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGTTTTAATAAATTGTCAGGGTTCATTCCAGAAGACCTGTTATCTCCATCACAATTGCAGGCTGTAGATTTGTCCAATAATAAGTTAAATGGGTCATTACCTGCAAAATTTTCTCCTAGCCTAATCAGGTTGAGATTGGGAGGCAATTTGCTTAGTGGATTAATTCCCACAGATATTTTTGCAAGAGTTCAAAGTTTGACATACTTGGAGCTTGAAAACAATAAGTTCAAAGGACATATACCAACTGGATTGGGCTCATGCAGGAATTTGTCATTGTTGAATTTAGCTCAGAACCAGTTGAGTGGAGAATTGCCTCCACAGCTTGGTACTCTTGTCAATCTTCAAGTGTTGAAGCTTCAAATGAACAAGCTTGAAGGTGAAATCCCATTTCAAATTGCCCAACTACAGAAGTTGTACGCACTGAATTTGAGCTGGAATTCTCTTGATGGATCAATTCCATCTGAGATCTCTAGGTTGAGTAATCTTACTTTCTTGAACCTGCAACAAAACAAGCTGGGTGGTTCCATACCTACATCCATTGGCAACTTGAAATTTCTTCTAGAACTCCAACTTGGGGGGAACCGGTTAAGTGGTGAGATTCCAAGCATGCCATCAAGTCTTCAGGTTTCATTGAATCTTAGTAGCAACCACTTTAGTGGACCAATTCCTAAAAGTTTTGGTTCTTTGGATAACCTGGAAGTCTTGGATCTCTCAAATAATAAATTTTTTGGTGAAATTCCCGGGGATCTAACCAAAATGTCGGCTTTGACGCAGTTGTTACTTTCTAACAATCCGCTGTCAGGTGTCATTCCCAGTTTCAAACCTTATGTTCATGTTGAATCAAATGGAACCAATCTTGTAAATAATACTGCACAGGACAACATAATACCACCCAACACTTCCCCAAGAACTGCAAAGAAGGGAATATCTGTTGCTGTGGCAATTCTCATTGCAATTGTAGCAGCTATTGTTCTTGTTTGCCTTGTCACCCTGTTGGTTGTGTCAATCTCACGACACTATTACAGGGTTAATGATGAGCATGTACAATCAGGTGAAGATCATCATCAGCTTCCTCAGGTTATCCAAAGTAATTTGTTAACTTCTAATGGAATCCATAGATCAAGCATTGACTTCTCCAAAGCCATGGAAGCTGTTGCAGAAACATCAAATGTTACTCTCAAAACAAGGTTTTCAACTTATTATAAGGCCATTATGCCATCTGGATCAATCTATTTTGTCAAGAAGCTGAACTGGAGTGACAAGATATTGCCAATGGGCAGTCATGACAAATTTGGTAAAGAGTTGGAAGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACAGACACTGCATATATACTGTATGAGTTTGTATCAAATGGCTCCCTCTATGATGTTCTGCATGGAAGCATGGGAAACTCTTTAGATTGGGCTAGCAGATATAGTATTGCTGTTGGGGTGGCTCAAGGACTTTCCTTTCTTCATGGATTTGCCTCTAGTCCATTACTACTCCTTGACCTATCAAGTAAGAGTATAATGCTGAAGTCCCTTAAGGAGCCTCTCGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAAAGTACAGGGAATTTTTCTGCAGTTGCTGGTTCTGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTCATTCTGCTTGAATTGCTAACAGGAAAACCTGCAGTGACTGAGGGAACAGAATTGGTCAAGTGGGTTTTGCGTAATTCAACAAACCAAGATCACATTCTTGATTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTAGCTATTCTCCAGGTTGCTCTTGTTTGTGTTAGTACATCCCCAGAAGCAAGACCAAAGATGAAGAGCGTACTTAGGATGCTCCTAAATGCTAGATGA 2790 0.3957 MVLSLLSPNQTNTMNTLYKLLDGHVSWNMDSNPCAWKGVTCDRSNSSVIQIAFNGYSLSSSDFLPVLCQIDTLEHLDVSNNHLSSIPDDFITECGKNKGLKLLNFTGNKLQGALPTFHGFDGLEYLDMSFNKLGGNISSELDGLVSLKSLNLSFNSFNGFLPTNLGKSMVLEHLVLSANRFHGKIPDEILSYESLTKIDLSVNNLSGSIPSNIGKLSKLNILLLSSNNLTGQIPTSLMKITTLTRFASNQNNFNGSVPSGITKYLTSLDLSFNKLSGFIPEDLLSPSQLQAVDLSNNKLNGSLPAKFSPSLIRLRLGGNLLSGLIPTDIFARVQSLTYLELENNKFKGHIPTGLGSCRNLSLLNLAQNQLSGELPPQLGTLVNLQVLKLQMNKLEGEIPFQIAQLQKLYALNLSWNSLDGSIPSEISRLSNLTFLNLQQNKLGGSIPTSIGNLKFLLELQLGGNRLSGEIPSMPSSLQVSLNLSSNHFSGPIPKSFGSLDNLEVLDLSNNKFFGEIPGDLTKMSALTQLLLSNNPLSGVIPSFKPYVHVESNGTNLVNNTAQDNIIPPNTSPRTAKKGISVAVAILIAIVAAIVLVCLVTLLVVSISRHYYRVNDEHVQSGEDHHQLPQVIQSNLLTSNGIHRSSIDFSKAMEAVAETSNVTLKTRFSTYYKAIMPSGSIYFVKKLNWSDKILPMGSHDKFGKELEVLAKLNNSNVMTPLAYVLSTDTAYILYEFVSNGSLYDVLHGSMGNSLDWASRYSIAVGVAQGLSFLHGFASSPLLLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDHILDFNVSRTSQAVRNQMLAILQVALVCVSTSPEARPKMKSVLRMLLNAR* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01217 929 Pfam Leucine rich repeat 72 133 IPR001611 GO:0005515
Rops5g01217 929 Pfam Leucine rich repeat 480 536 IPR001611 GO:0005515
Rops5g01217 929 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 193 925 - -
Rops5g01217 929 ProSiteProfiles Protein kinase domain profile. 656 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01217 929 Gene3D Phosphorylase Kinase; domain 1 624 735 - -
Rops5g01217 929 PRINTS Leucine-rich repeat signature 499 512 - -
Rops5g01217 929 PRINTS Leucine-rich repeat signature 265 278 - -
Rops5g01217 929 Gene3D Ribonuclease Inhibitor 6 263 IPR032675 -
Rops5g01217 929 Gene3D Transferase(Phosphotransferase) domain 1 736 929 - -
Rops5g01217 929 Gene3D Ribonuclease Inhibitor 264 561 IPR032675 -
Rops5g01217 929 Pfam Protein tyrosine and serine/threonine kinase 697 925 IPR001245 GO:0004672|GO:0006468
Rops5g01217 929 ProSiteProfiles Leucine-rich repeat profile. 72 93 IPR001611 GO:0005515
Rops5g01217 929 SUPERFAMILY Protein kinase-like (PK-like) 667 925 IPR011009 -
Rops5g01217 929 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 736 929 - -
Rops5g01217 929 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 305 562 - -
Rops5g01217 929 SUPERFAMILY L domain-like 27 325 - -
Rops5g01217 929 SMART LRR_sd22_2 120 143 - -
Rops5g01217 929 SMART LRR_sd22_2 499 528 - -
Rops5g01217 929 SMART LRR_sd22_2 429 455 - -
Rops5g01217 929 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 624 735 - -
Rops5g01217 929 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 164 257 - -
Rops5g01217 929 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 8 163 - -
Rops5g01217 929 SMART LRR_typ_2 381 405 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 523 545 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 499 522 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 333 357 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 144 168 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 70 93 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 429 453 IPR003591 -
Rops5g01217 929 SMART LRR_typ_2 265 286 IPR003591 -
Rops5g01217 929 Pfam Leucine rich repeat N-terminal domain 26 42 IPR013210 -
Rops5g01217 929 SUPERFAMILY L domain-like 256 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01217 Rops-Chr5 26009815 26013381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01217 123 929 Receptor kinase-like Gene Family AT2G41820 38.526 2.91e-155 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops5g01217 PK_Tyr_Ser-Thr 2.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01217 - - gmx:100796647 1280.77