Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01215 ATGGATTCAAAAGGGAGGCTATGTACTAACACATGGGAAAGATCATCTTCCATAACCTCTGCTGCAAACGGATTACAGACAAATTTATCCTCAGATCCTCTCTCTTTCCCAGGTTTTGGTTTGCAGCATGAACAACAAAAATGGGATGATCCCTCCTCTATTTCAGATTATGGGGTCAGGGCAGAAGCACCTCTCAAAGAGTTCAACCAATCCTCTCAAACCCAGTCTCTGCTTCCCTGCAACTCCAACAATGAGATTAAGATCCCTGATCAAGAATCATCACAAACTAGCAGACTCCAAGATTGGGATCCTAGTGTTATGTTGAATAATCTTTCCTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATTTAGTGCACTTGATTGTTGGTCAAAAAGGCCAACCTAATGAACTTGTTATTCGGGAACAGCAGCTTATCACAGCTGATCTTACATCAGTTATTGTTCAACTGATCTCTACTGCTGGTAATCTTCTCCCTTCTGTTAGGCATACCTTTATAAACACTAATCCATTGGTTGGACAGCTTGGCCAGCTTCATGGGATTACTGTTCCTTCAGGGTCAGGTCCTAGTAGCGGCTGTGTTCAACCACAAAATAACAGTGGAAATAAATTGTCTGATCAGTCCTTGCAGAATGATCTGCCTAATAATTGTGAAATTGAACAAAACAACAACATGGAAGAACATGATTTTAAAGATGAAGAAGATGCAGATGATGGAGAAAACCTTCCACTTGGTTCATATGAGATTTTACAATTAGAAAAAGAAGAAATTCTTGCACCTCATGCACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGAATGCACATGCGAGGGCATGGTGATGAGTACAAAACCACAGCAGCGCTTGCAAAACCGCATAAAGAATCTGGGTCTCAGCCAAAGCTTATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCACCCTCTGAAGACTATATTATGTGTCAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACACTTGCAGCAGATGCAATACCAAGAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCCATTCCCTTGGATGACACTAAAGGGGTAGCTGGGCCACCTGCTCATGACAGCAAAGAAAACAGTAAGGTAGAGGGTATGAACTTCTGTTTTGGATCAAATTCTTCAAGTGGAAATGGAGATCAAAATGTCATGGATGTAAAAAGCAATATTGATGATCCTATCAGTTATTTGTCACCATTCAACTTTGAAGCTAACTTTGGTGGGTTTAATGAATTCACTAGACCTCCATTTGAAGAATCAGAAAGTTCTTTCTCTTTTCTCATGCCCGGATCTTTTAAATCTGGAGGAGAATAA 1530 0.4046 MDSKGRLCTNTWERSSSITSAANGLQTNLSSDPLSFPGFGLQHEQQKWDDPSSISDYGVRAEAPLKEFNQSSQTQSLLPCNSNNEIKIPDQESSQTSRLQDWDPSVMLNNLSFLEEKIHQLQDLVHLIVGQKGQPNELVIREQQLITADLTSVIVQLISTAGNLLPSVRHTFINTNPLVGQLGQLHGITVPSGSGPSSGCVQPQNNSGNKLSDQSLQNDLPNNCEIEQNNNMEEHDFKDEEDADDGENLPLGSYEILQLEKEEILAPHAHFCTICGKGFKRDANLRMHMRGHGDEYKTTAALAKPHKESGSQPKLIKRYSCPYPGCKRNKDHKKFHPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVAGPPAHDSKENSKVEGMNFCFGSNSSSGNGDQNVMDVKSNIDDPISYLSPFNFEANFGGFNEFTRPPFEESESSFSFLMPGSFKSGGE* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01215 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 83 492 IPR044300 GO:0010044|GO:0010447
Rops5g01215 509 FunFam Zinc finger 45-like 269 293 - -
Rops5g01215 509 SUPERFAMILY beta-beta-alpha zinc fingers 269 296 IPR036236 -
Rops5g01215 509 MobiDBLite consensus disorder prediction 69 99 - -
Rops5g01215 509 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Rops5g01215 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 297 IPR013087 -
Rops5g01215 509 SMART c2h2final6 270 292 IPR013087 -
Rops5g01215 509 SMART c2h2final6 357 379 IPR013087 -
Rops5g01215 509 SMART c2h2final6 319 352 IPR013087 -
Rops5g01215 509 Gene3D Classic Zinc Finger 255 323 - -
Rops5g01215 509 MobiDBLite consensus disorder prediction 193 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01215 Rops-Chr5 25980853 25983515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01215 237 500 C2H2 Transcription Factor Family AT1G34370 70.330 1.18e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops5g01215 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01215 - - gmx:100500526 782.711