Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01212 ATGGAAGATTCAGAGGAAGATGAGCTTCTGAACCTCACACTTTCAGTTGCTGCTGGTAAGGAAAGGAAAAAGAAAGTAAAGACAAGGGATAATGCAAATTCTATTAGTCCTATGAACACCTATGAAGGCTATGAAGGGAAGATCTTTAGGCTCCTCCAAATGAGAGAACAGATGCTAAGACAAGACCACAGGAGGAAAGGAGTGGTTGAAGATGGAAATGGCCTCCCTTTAATACATTTGCTGCTCACAACTGCCACTGCTGTTGATGAGAACAACTTGGGTGCAGCAATAGAGAATCTCACTGACCTGTATCAAATAGTTTCCCTAACAGGTGACTCAGTTCAACGTGTGGTGGCCTATTTTGCTGATGGTTTGGCTGCAAGGCTTCTCACTAGGAAATCCCCTTTCTATGACATGCTCATGGAGGAACCAACAAATGAGGAAGAGTTTGTGGCATTTACAGATCTTTATAGAGTCTCACCCTATTACCAATTTGCACATTTCACAGCAAATCAGGCTATCTTGGAGGCTTTTGAGGAGGAGGAAGAGAGGAACAACCATGCACTACATGTCATTGATTTTGATGTTTCCTATGGCTTCCAATGGCCTTCTCTTATTCAGTCACTTTCTGAGAAGGCAACCAGTGGAAACAGAATTTCCCTTAGGATAACAGGATTTGGGAACAACCTGAAAGAATTGCAAGAAACTGAGTCTAGATTAGTTAGCTTCTTAAGGGGTTTTGGTAACCTTGTTTTTGAATTCCAAGGGGTGCTAAGAGGCTCAAGGGTCATCAATCTAAAGAAAAAGAAAAATGAAACTGTGGCAGTGAACTTAGTTTCTTATCTGAACACTTTGAGTTGTTTTATAAAAATCTCTGACACATTGAAATTTGTTCATTCTCTTACCCCTTCCATTGTACTCTTGGTGAAACAAGAAGGTAGCAGGAGTCTTAGGACCTTCTTGTCAAGATTCACAGAGTCTTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGATTGCCTTCCACTGGAGAGTATTGAGAGGCTGAGGATTGAGAAGAAGCTTCTGGGAAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTTGATTGCCCAAAATATGAGAGGATGGAAACTTGGAAAGCAAGAATGGAGAATCATGGGTTTGCTGGAACAAAAATAAGCTCAAAGTCTTTGATCCAAGCAAAACTGCTTTTGAAGATGAGGACCCATTATTGTCCACTTCAATTTGAGGAAGAGGGTGGTGGGGGTTTCAGGGTTTCTGAAAGGGATGAAGGAAGAGCTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTTACTGTCTCAGCATGGCAACCAATCTGA 1374 0.4156 MEDSEEDELLNLTLSVAAGKERKKKVKTRDNANSISPMNTYEGYEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLTTATAVDENNLGAAIENLTDLYQIVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTNEEEFVAFTDLYRVSPYYQFAHFTANQAILEAFEEEEERNNHALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETESRLVSFLRGFGNLVFEFQGVLRGSRVINLKKKKNETVAVNLVSYLNTLSCFIKISDTLKFVHSLTPSIVLLVKQEGSRSLRTFLSRFTESLHYFAAMFDSLDDCLPLESIERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKARMENHGFAGTKISSKSLIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQPI* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01212 457 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 74 450 IPR005202 -
Rops5g01212 457 ProSiteProfiles GRAS family profile. 68 455 IPR005202 -
Rops5g01212 457 Pfam GRAS domain family 77 455 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01212 Rops-Chr5 25943870 25945243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01212 85 456 GRAS Transcription Factor Family AT3G54220 34.646 1.81e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops5g01212 GRAS 8.9e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01212 - - gmx:100809458 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01212 5 25943870 25945243 Rops5g01212 5 25943870 25945243 ECH
Rops5g01212 5 25943870 25945243 Rops6g02486 6 45247811 45249187 PCT