Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01201 ATGCAGTTGCATAGATTTCAGCAATTTTATCGTGAAATATCTAAATGTGAGTATTTCAATTCAAACCCCAGTTCAGTTCAGCAACTAGAAGCTCCTCAGGACCTGAATGTAACCGTGTCGGATATATCGGATCGATTGATCAAGATCCAGATCGCCAATCATCCTCTTTATCCAGATTTAGTGTCTGCATACATAGAATGCCAAAAGGGAGCATCACCAGAAGTGGCATCCCTTCTTGAAGAAATAGGTCGAGATAGCCACCCCATGAATGCTCGCCGTGAGATAGGGCATGGTCCTGAACTTGACGAGTTTATGGAATCATACTGCGAAGTTCTTCATAGATACAAAGAGGAGTTGTCCAACCCCTTCAATGAAGCAACTTTGTTTTTGGGTTATATGGAATCACAACTCAGCAACCTTTGTGAGGGAACACTAACAAAGTCATCGGATAACAATCGCTCGGATGAGGTAGCTGTGGCTTCAGAGGAGGAATTAAGTTGTGGGGATATTGAAGGTGATGAATATGCTGGTACTCGCCCAGGTGATAAAAAGCTTAAAGAAATGCTCCTTCGTAAGTACAGTGGCCATTTTGGCAATTTGAGAAAGGAATTTCTATAA 618 0.4207 MQLHRFQQFYREISKCEYFNSNPSSVQQLEAPQDLNVTVSDISDRLIKIQIANHPLYPDLVSAYIECQKGASPEVASLLEEIGRDSHPMNARREIGHGPELDEFMESYCEVLHRYKEELSNPFNEATLFLGYMESQLSNLCEGTLTKSSDNNRSDEVAVASEEELSCGDIEGDEYAGTRPGDKKLKEMLLRKYSGHFGNLRKEFL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01201 205 Pfam KNOX2 domain 95 141 IPR005541 GO:0003677|GO:0005634
Rops5g01201 205 SMART KNOX1_2 45 88 IPR005540 GO:0003677|GO:0005634
Rops5g01201 205 SMART ELK_2 184 205 IPR005539 GO:0003677
Rops5g01201 205 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 40 143 - -
Rops5g01201 205 Pfam ELK domain 185 205 IPR005539 GO:0003677
Rops5g01201 205 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Rops5g01201 205 SMART KNOX2_2 91 142 IPR005541 GO:0003677|GO:0005634
Rops5g01201 205 Pfam KNOX1 domain 47 87 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01201 Rops-Chr5 25774131 25777799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01201 41 204 Homeobox Transcription Factor Family AT1G23380 46.243 6.31e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01201 - - gmx:100814830 265.388