Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01184 ATGGCTGCTGTAAATGAAGATGCTGCTGAACAAGAATTTGCACCACAAAAGAAGAAGCCAACTTCTGAGGATGAGAAGAGGAAGAAGAAAATTTTGCCTGGGAGTTTGATGAAAGCTTTGGTGAGGCCTGGTGGGGGTGATTCTGGACCTTCAGATGGTGACCAGGTTATCTATCACTGCACAATTCGAACTTTGGATGGAGTAGTTGTGGAATCTACCAGATCGGATCATGGAGGCAAGGGCATACCGATAAGACATGTTCTGGGCAAAAGCAAGATGCTATTGGGCTTGCTCGAAGGAATTCCAACGATGTTGAAGGGCGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGAGGATTGTCCTATTTCTGCTCCTAGTGGTTTTCCTAAGGATGATGAACTTCATTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGTTGTTACTGATGATTTGGGAGTTGTAAAAAAGGTACTATGTGAAGGGCAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACTGTTACTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTCTTTACATTTGGAAAATCTGAGGTACCTAAAGGTCTTGAAATTGGGATGGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTTACCAGGCAGTATTTAACTGAGTCTCCTCTGATGCCTTTAATAGAAGAGTATGATGAAGTCCAGTTTGAAGTGGAGCTTGTTCACTTTATTCAAGTGAGGGACATGCTTGGAGATGGGCGCTTGATAAAACGCCGGATTCGTGATGGAAAAGGTGATTTTCCAATGGATTGCCCCCTTCATGACAGTCAACTTTGTGTTCATTACAAGGGCACTGTTCTCAATGAAGAAAAGACAGTATTCTATGATACAACAGTTGATAATGATGGTCAGCCCTTAGAGTTCTGTTCTGGAGAAGGGCTTGTACCAGAGGGATTTGAAATGTGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGTCCACCTGACTATGCTTATGATAAGTTTCCAAGGCCTTCAAATGTCCCTGAGGGTGCTCATATTCAATGGGAAATTGAGCTTCTAGGTTTTGAAATGCCGAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGAATGAAGCTGAAAATATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGATGAGGAAGGAAAAATTTTTGTGGATACACGTAATATGCTACACCTGAATGTTGCTGCATGCTATCTGAAGCTGGGAGAATGCAAAAAGTCCATTGAGACTTGCAATAAGGTTCTGGAAGCAAATCCTGCACATATCAAGGGTCTTTATCGCCGTGGAATGGCCTACATGGCTGCTGGAGATTTTGAAGAAGCAAGGGGTGATTTCAAAATGATGATGAAAGTCGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTCTAAAACTAAGGCAGAAGGAGCAGGAAGTTGAGAAGAAAGCTCGGAAACAATTTAAAGGGCTATTTGACAAGAAGCCTGGAGAAATTGCAGAAGCTAAAGCTGATGAAGATGGAGATCAGATGACAAGTGAAAGCCAAAAGGATGGTGAAGTGCAAGGAGACTCAGATGGAACAAATTCAGACGATTCACATGAAGCTGCACCCGATGCACATCGAATGGGTTGGTTCTCTCTCTTTTGGTCCTCTGGTAGAGGGCTTTTTTCATCTCTTGGGCTTCAAAGATGCACCATACTATAA 1878 0.4217 MAAVNEDAAEQEFAPQKKKPTSEDEKRKKKILPGSLMKALVRPGGGDSGPSDGDQVIYHCTIRTLDGVVVESTRSDHGGKGIPIRHVLGKSKMLLGLLEGIPTMLKGEVAMFKMKPQLHYGEEDCPISAPSGFPKDDELHFEIELIEFFKAKVVTDDLGVVKKVLCEGQGWESPREPYEVKAWISAKTVTGKLIMSHTEGEPYFFTFGKSEVPKGLEIGMGTMVREEKAVIYVTRQYLTESPLMPLIEEYDEVQFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSQLCVHYKGTVLNEEKTVFYDTTVDNDGQPLEFCSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFPRPSNVPEGAHIQWEIELLGFEMPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKIFVDTRNMLHLNVAACYLKLGECKKSIETCNKVLEANPAHIKGLYRRGMAYMAAGDFEEARGDFKMMMKVDKSTESDATAALLKLRQKEQEVEKKARKQFKGLFDKKPGEIAEAKADEDGDQMTSESQKDGEVQGDSDGTNSDDSHEAAPDAHRMGWFSLFWSSGRGLFSSLGLQRCTIL* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01184 625 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 263 IPR001179 GO:0003755
Rops5g01184 625 SMART tpr_5 486 519 IPR019734 GO:0005515
Rops5g01184 625 SMART tpr_5 403 436 IPR019734 GO:0005515
Rops5g01184 625 SMART tpr_5 452 485 IPR019734 GO:0005515
Rops5g01184 625 SUPERFAMILY FKBP-like 268 391 - -
Rops5g01184 625 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Rops5g01184 625 PANTHER PEPTIDYLPROLYL ISOMERASE 10 152 - -
Rops5g01184 625 Gene3D - 2 150 IPR046357 GO:0003755
Rops5g01184 625 Gene3D Tetratricopeptide repeat domain 397 551 IPR011990 GO:0005515
Rops5g01184 625 FunFam Peptidylprolyl isomerase 153 263 - -
Rops5g01184 625 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 386 IPR001179 GO:0003755
Rops5g01184 625 SUPERFAMILY FKBP-like 18 152 - -
Rops5g01184 625 FunFam Peptidylprolyl isomerase 264 388 - -
Rops5g01184 625 SUPERFAMILY FKBP-like 154 262 - -
Rops5g01184 625 MobiDBLite consensus disorder prediction 1 36 - -
Rops5g01184 625 Gene3D - 264 385 IPR046357 GO:0003755
Rops5g01184 625 MobiDBLite consensus disorder prediction 11 32 - -
Rops5g01184 625 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 149 IPR001179 GO:0003755
Rops5g01184 625 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 146 IPR001179 GO:0003755
Rops5g01184 625 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 176 260 IPR001179 GO:0003755
Rops5g01184 625 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 296 383 IPR001179 GO:0003755
Rops5g01184 625 Gene3D - 151 263 IPR046357 GO:0003755
Rops5g01184 625 MobiDBLite consensus disorder prediction 556 571 - -
Rops5g01184 625 MobiDBLite consensus disorder prediction 556 594 - -
Rops5g01184 625 FunFam Peptidylprolyl isomerase 10 152 - -
Rops5g01184 625 FunFam Peptidylprolyl isomerase 391 547 - -
Rops5g01184 625 SUPERFAMILY TPR-like 400 541 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01184 Rops-Chr5 25206621 25228480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01184 36 551 Calmodulin-binding Proteins AT5G48570 30.418 1.01e-61 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01184 - - gmx:100818201 1125.15