Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01172 ATGCCAACCAAAATTCAGAACTTTGCTAGAAGTGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCAGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGATTGCCTACAAAAAACCCCACCTCCTGTTTTAATATTCTGTGAGAACAAGGCTGATGTGGATGACATTCATGAATATCTTCTCTTGAAAGGTGTGGAAGCAGTGGCTGTTCATGGAGGCAAGGATCAGGAACAGAGAGAGTATGCCATTGCAGCTTTTAAAGCTGGAAACAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGACATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGAATGA 435 0.4 MPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLDCLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEQREYAIAAFKAGNKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIE* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01172 144 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 30 144 IPR001650 -
Rops5g01172 144 Pfam Helicase conserved C-terminal domain 43 143 IPR001650 -
Rops5g01172 144 CDD SF2_C_DEAD 31 143 - -
Rops5g01172 144 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 143 - -
Rops5g01172 144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 143 IPR027417 -
Rops5g01172 144 Gene3D - 29 144 IPR027417 -
Rops5g01172 144 SMART helicmild6 69 143 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01172 Rops-Chr5 24985791 24986518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01172 1 143 Eukaryotic Initiation Factors Gene Family AT3G13920 30.137 2.59e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01172 K13116 - gmx:100814127 281.182