Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01171 ATGTCAGTAACTGCGAACTGCCACTTGATTGAGCGTTTGTTTTTTGAGTCTTCTAAAACGGGTAGAGATGACAGTTTGAAAACACAAACCTGTGTTGAGCTAGTGGACAATTGTCATTCAAGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCTTTCACAGGCTCTGGAAAAACTCTGGTCTTTGTGCTGCCCATGATCATGGTGGCAATGCGGGAGGAAATTATGATGCCTATAGTTCCTGGAGAAGGACCATTTGGTTTGATTATTTGTCCATCAGCAGGCTGGCTAGGCAAACTTATGATGTGGTTGAACATTTCCTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTGAGGCCTCTGCTTTGTATTAGTGGAGTGGACATGAGATCGCAGCTTGAGATTGTGAAGAAGGGAGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAACATGAATCTTGATTACTGTAGGTATTTAACATTAGATGAGGCTGATCGATTGGTAGATTTAGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCTAA 594 0.4226 MSVTANCHLIERLFFESSKTGRDDSLKTQTCVELVDNCHSSARPSCYLIWAGYDWDCFHRLWKNSGLCAAHDHGGNAGGNYDAYSSWRRTIWFDYLSISRLARQTYDVVEHFLIPLKEAGYPELRPLLCISGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKNMNLDYCRYLTLDEADRLVDLGFEDDIREVFDHF* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01171 197 Gene3D - 97 197 IPR027417 -
Rops5g01171 197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 197 IPR014001 -
Rops5g01171 197 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 100 194 - -
Rops5g01171 197 Pfam DEAD/DEAH box helicase 99 196 IPR011545 GO:0003676|GO:0005524
Rops5g01171 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 196 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01171 Rops-Chr5 24985303 24985969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01171 129 194 Eukaryotic Initiation Factors Gene Family AT3G13920 40.909 3.00e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01171 K13116 - rcu:8263728 185.652