Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01163 ATGGATTTCAGGGATGGTCGTGTATCGAATGAGCATCGTGAGCGTCATCGATCTGTAACAGAAAGTCAAGATCCATTGCAACTTTCTCCCAAGTCACCAAGATCTCCTAAATCTCCAAGGTCCCCAAAGGTGCAAGGCAAGTGCAGCAATGTAAGTCCAAAGAATCACAGGCAATCACATTCTTCAAAAGATGGACGTCCAAAGAAAGGTGGCTCTGGTGGTAAAGGCACCTGGGGTGGATTGCTTGATACAGATGACATGAATATTCTTGACCCAAATGATCCAAACTTTGACAGCAGTGAGGAATATGACCATTCAAATGAAATGAAAAAGACAACGGATCTGGATGACTACAAGAAAAAAGCTACAATAATAGTGGAAGAATACTTTACCAATGATGATGTTGAAGCAACAATAAATGAACTTAGAGAACTTGGAAAACCAGAATATAGCTACTATTTTATCAAAAAGCTTGTTTCTATGTCAATGGACAGACATGACAAAGAGAAAGAAATGGCTGCTATTCTGTTATCTGCACTTTATGCTGATGTAATTGATCCTCCACAAGTTTACAAAGGCTTCAGCAAATTAGTTGAATCAGCAGATGACTTGATTGTAGATATACCAGACACGGTTGATATTCTAGCACTTTTCATAGCTCGAGCTGTCGTTGATGACATCCTTCCTCCAGCATTTTTGAAGAAACAGATAGCCTACTTAAGCAAAGATTCTAAAGGGGCTGAGGTCTTGAAGAAAGCTGAGAAAAGTTATCTAGCAGCCCCTTTGCATGCAGAAATTGTAGAGAGGTGCTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTGAAGGCTAGGATAAACAACTTTTTGAAGGAGTATGTGGTAAGTGGTGACAAAAAAGAAGCCTTCAGATGCATCAAAGATTTGAAAGTTCCTTTCTTCCATCATGAAATAGTGAAAAGGGCTCTTATAATGGCAATGGAAAGGCGTAGAGCAGAAACACCACTACTAGACCTATTGAAGGAGGCAGCTGAAGAAGGTTTCATTAACTCTAGCCAAATGTCTAAAGGGTTCAGTAGGTTGATTGACACTGTTGATGACTTATCACTTGACATACCAAATGCACGTGAAATACTGCAGCAGCTAATGTCTAAAGCAGCATCTGAGGGTTGGTTGTGTGTGTCATCTTTGAAATCACTTTCAGTGGAGCCTGAAAAGAACTCGATAAAAGATAGTGCTACTGCTAGAAGTTTCAAGATAAAGACTCAGTCCATCATCAAAGAGTACTTCTTATCAGGTGATATAATGGAGGTGAATAATTGTCTAGAACAAGAGAACAGCAACAACTGTGCTGAACTCAATGCAATCTTTGTTAAAAAACTGATAACTCTGGCAATGGATAGGAAGAACAGGGAGAAGGAAATGGCTTCTGTATTGCTTTCATCTTTGTGTTTCCCAGCTGATGATGTTGTAAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGATACTGCTCTAGATAATCCTGTTGTTGTTGAGGATCTTGCCAAGTATCTTGCTAGAGCAGTAGTGGATGAAGTCCTAGCTCCACAACACCTTGAAGAGATTGGAACACAATGTTTGGAGCCAGATTCAATTGGGAGCAAAGTGCTTCAAATGGCAAAGTCATTGCTTAAGGCTAGACTTGCCGGGGAGCGAATCTTGAGGTGTTGGGGTGGTGGAGGAAGCAGTAGGCCTGGATGGGCAGTTGAGGATGTCAAGGACATGATTGGAAAGTTGCTGGAGGAGTATGAGTCTGGAGGTGACATAAGAGAGGCGTGTCGCTGCATAAAAGAGTTAGGTATGCCATTTTTCCATCATGAGGTTGTCAAGAAAGCTTTGGTGGCAATAATGGAAAAGAAGAATGAGAGGTTATGGGGTCTACTCAGGGAATGCTTTGAATCAGGACTAATAACCATGAATCAAATGGTGAAAGGTTTTGGAAGGGTTGCAGAATCTCTTGATGACTTGGCTTTGGATGTCCCTGATGCTAAAAATCAGTTTGCATACTATGTTGAAAAAGCAAAGACTCAAGGATGGTTGGATAATTCACTATGTTTCAGCAAATTGGAACATGCAGAGAATGGCACTCACTGA 2136 0.4087 MDFRDGRVSNEHRERHRSVTESQDPLQLSPKSPRSPKSPRSPKVQGKCSNVSPKNHRQSHSSKDGRPKKGGSGGKGTWGGLLDTDDMNILDPNDPNFDSSEEYDHSNEMKKTTDLDDYKKKATIIVEEYFTNDDVEATINELRELGKPEYSYYFIKKLVSMSMDRHDKEKEMAAILLSALYADVIDPPQVYKGFSKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIAYLSKDSKGAEVLKKAEKSYLAAPLHAEIVERCWGGSKNTTVDDVKARINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRRAETPLLDLLKEAAEEGFINSSQMSKGFSRLIDTVDDLSLDIPNAREILQQLMSKAASEGWLCVSSLKSLSVEPEKNSIKDSATARSFKIKTQSIIKEYFLSGDIMEVNNCLEQENSNNCAELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAKYLARAVVDEVLAPQHLEEIGTQCLEPDSIGSKVLQMAKSLLKARLAGERILRCWGGGGSSRPGWAVEDVKDMIGKLLEEYESGGDIREACRCIKELGMPFFHHEVVKKALVAIMEKKNERLWGLLRECFESGLITMNQMVKGFGRVAESLDDLALDVPDAKNQFAYYVEKAKTQGWLDNSLCFSKLEHAENGTH* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01163 711 MobiDBLite consensus disorder prediction 22 56 - -
Rops5g01163 711 FunFam programmed cell death protein 4 107 260 - -
Rops5g01163 711 FunFam Programmed cell death protein 4 267 403 - -
Rops5g01163 711 SUPERFAMILY ARM repeat 582 701 IPR016024 -
Rops5g01163 711 Gene3D - 267 400 - -
Rops5g01163 711 Gene3D - 569 701 - -
Rops5g01163 711 SUPERFAMILY ARM repeat 112 275 IPR016024 -
Rops5g01163 711 MobiDBLite consensus disorder prediction 1 110 - -
Rops5g01163 711 PANTHER PROGRAMMED CELL DEATH 4 14 697 IPR039778 GO:0045892
Rops5g01163 711 MobiDBLite consensus disorder prediction 1 21 - -
Rops5g01163 711 FunFam programmed cell death protein 4 407 562 - -
Rops5g01163 711 SMART ma3_7 586 695 IPR003891 -
Rops5g01163 711 SMART ma3_7 418 529 IPR003891 -
Rops5g01163 711 SMART ma3_7 282 393 IPR003891 -
Rops5g01163 711 SMART ma3_7 118 229 IPR003891 -
Rops5g01163 711 ProSiteProfiles MI domain profile. 417 538 IPR003891 -
Rops5g01163 711 SUPERFAMILY ARM repeat 411 575 IPR016024 -
Rops5g01163 711 Gene3D - 104 258 - -
Rops5g01163 711 Gene3D - 406 561 - -
Rops5g01163 711 ProSiteProfiles MI domain profile. 585 704 IPR003891 -
Rops5g01163 711 ProSiteProfiles MI domain profile. 117 238 IPR003891 -
Rops5g01163 711 ProSiteProfiles MI domain profile. 281 402 IPR003891 -
Rops5g01163 711 SUPERFAMILY ARM repeat 278 398 IPR016024 -
Rops5g01163 711 Pfam MA3 domain 119 229 IPR003891 -
Rops5g01163 711 Pfam MA3 domain 283 392 IPR003891 -
Rops5g01163 711 Pfam MA3 domain 587 695 IPR003891 -
Rops5g01163 711 Pfam MA3 domain 419 528 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01163 Rops-Chr5 24700978 24703760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01163 577 699 Eukaryotic Initiation Factors Gene Family AT5G57870 31.746 1.44e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01163 - - gmx:102668745 1188.33