Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01161 ATGGCGGCGGCGATTTCTGCATCGGTAGCGGCGGTTGGTGGCATGCGATTAGAGAATGCGTCGTTGTACGTTGGGGATCTTGAAGGGAATGTGAATGAGGGACAACTGTATGATCTGTTCAGCCAAGTGTCTCAGGTGGTTTCCATTAGGGTTTGCAGGGATCTGACAAGAAGATCATCTCTTGGTTATGCTTATGTCAACTTTGCAAGTGCTCAAGATGCTGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGGAAAAGTGGATATGCAAATGTGTTCATTAAGAACCTGGACAAATCAATAGATACCAAGGCACTACATGATACTTTTGCTGCCTTTGGAACTGTTCTTTCTTGTAAGGTAGCTATTGATAACAATGGTCAATCAAAAGGATATGGTTTTGTACAGTTTGACAATGATGAGTCTGCACAGAATGCCATCAAAAAATTGAATGGCATGTTGATAAACGATAAAAAAGTCTATGTTGGACTTTTTGTTCGGCGCCAAGAAAGGGCTCAAGCAAATGGATCACCAAAGTTTACTAATGTGTACGTGAAAAACTTCCCTGAAACATATTCAGATGAGGACCTTAAGAAGTTATTTGGCACCTATGGTACAATAACTAGTGCTGTGGTCATGAAAGATGGGAATGGGAATTCTAGATGCTTTGGTTTTGTGAATTTCCAAAGTCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCGCAATCAATGATGAAAAGGTTTTATTTGTGGGGAGGGCTCAGAGAAAGGCAGAAAGGGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAAATTAAAGAGATATGAGAAATTACAAGGTGCTAATTTATACTTGAAAAACCTTGATGATGGCATTAATGATGAAAACTTGAAGGAGCTATTTTCTGAGTTTGGAACAATAGTATCTTGTAAGGTGATGCTTGATTCCCATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTTTCTAATCGTGAGGAAGCAACTAAAGCTTTGAACGAAATGAATGGAAAGATGATTGGAGGGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCATTTGCAGGCTCGTTTTTCTCAAATCCAAGCACCAGGTGGAATTGCACCTTTGCCTGCAGGAATTTCTGGATATCATCCAGGGGCACCTAGACTTGCCCCACAACAGTTGTATTATGGTCAAAGTGCATCTGGGGGTCTCATTCCACCTCAGCCAACAGGATATGGTTTCCAGCAGCAACTCTTGCCAGGTATGCGGGGTGTTGCTCCTAATTTCATTATGCCATACCACTTGCAGAGGCAGGGTCAGCCTGGGCAGAGGATGGGTGTTCATCGAGCTGGAAATCTCCAACAGATGCAGCAGAACCAGATGCTACATCGTAACTCCAACCAAGGGTTTAGATCTATGGGAAATGGTCGAAATGGCATGGATCCATCAGGAATTCCTCAAGGTCGTCCAATGATGCCATTACCCTTTGATGGTTCAGGAGTTGCTGCAGCTCCTATTGATGCTCAGCGTACACTTGCCTCGGCATTGGCTTCTGCAACCCCAGAAAATCAGCGTCTGATGCTTGGTGAACATCTATATCCGCTTGTGGACCGTCTTACACCAAACCATCAAACAGCAAAGGTGACAGGAATGCTACTGGAAATGGACCAGGCAGAGGTAATCCATCTGATTGAATCTCCTGAGGACTTGAAGATAAAGGTATCTGAGGCAATGCAAGTCCTTCGTCAAGCTGCATCGGGTACTGAAGTTGGCAATCAGCTTGGCTCATTGTCATTGAATGAATGA 1893 0.4406 MAAAISASVAAVGGMRLENASLYVGDLEGNVNEGQLYDLFSQVSQVVSIRVCRDLTRRSSLGYAYVNFASAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDTKALHDTFAAFGTVLSCKVAIDNNGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVRRQERAQANGSPKFTNVYVKNFPETYSDEDLKKLFGTYGTITSAVVMKDGNGNSRCFGFVNFQSPDSAAAAVERLNGTAINDEKVLFVGRAQRKAEREAELKAKFEQEKLKRYEKLQGANLYLKNLDDGINDENLKELFSEFGTIVSCKVMLDSHGHSKGSGFVAFSNREEATKALNEMNGKMIGGKPLYVAVAQRKEERKAHLQARFSQIQAPGGIAPLPAGISGYHPGAPRLAPQQLYYGQSASGGLIPPQPTGYGFQQQLLPGMRGVAPNFIMPYHLQRQGQPGQRMGVHRAGNLQQMQQNQMLHRNSNQGFRSMGNGRNGMDPSGIPQGRPMMPLPFDGSGVAAAPIDAQRTLASALASATPENQRLMLGEHLYPLVDRLTPNHQTAKVTGMLLEMDQAEVIHLIESPEDLKIKVSEAMQVLRQAASGTEVGNQLGSLSLNE* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01161 630 Gene3D - 109 182 IPR012677 -
Rops5g01161 630 SUPERFAMILY RNA-binding domain, RBD 198 384 IPR035979 GO:0003676
Rops5g01161 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Rops5g01161 630 FunFam Polyadenylate-binding protein 109 182 - -
Rops5g01161 630 Coils Coil 272 300 - -
Rops5g01161 630 Pfam Poly-adenylate binding protein, unique domain 545 610 IPR002004 GO:0003723
Rops5g01161 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Rops5g01161 630 SMART poly_2 549 613 IPR002004 GO:0003723
Rops5g01161 630 Gene3D - 286 392 IPR012677 -
Rops5g01161 630 Gene3D - 184 285 IPR012677 -
Rops5g01161 630 Gene3D - 535 615 - -
Rops5g01161 630 FunFam Polyadenylate-binding protein 13 108 - -
Rops5g01161 630 CDD RRM3_I_PABPs 198 278 - -
Rops5g01161 630 CDD RRM2_I_PABPs 106 181 IPR045305 -
Rops5g01161 630 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 537 615 IPR002004 GO:0003723
Rops5g01161 630 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 20 611 IPR006515 GO:0003723
Rops5g01161 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Rops5g01161 630 PANTHER RNA BINDING PROTEIN 20 82 - -
Rops5g01161 630 FunFam Polyadenylate-binding protein 189 285 - -
Rops5g01161 630 Gene3D - 15 108 IPR012677 -
Rops5g01161 630 SMART rrm1_1 304 376 IPR000504 GO:0003723
Rops5g01161 630 SMART rrm1_1 109 181 IPR000504 GO:0003723
Rops5g01161 630 SMART rrm1_1 21 94 IPR000504 GO:0003723
Rops5g01161 630 SMART rrm1_1 200 273 IPR000504 GO:0003723
Rops5g01161 630 SUPERFAMILY RNA-binding domain, RBD 19 188 IPR035979 GO:0003676
Rops5g01161 630 FunFam Polyadenylate-binding protein 286 391 - -
Rops5g01161 630 SUPERFAMILY PABC (PABP) domain 486 614 IPR036053 GO:0003723
Rops5g01161 630 SMART rrm2_1 109 181 IPR003954 GO:0003676
Rops5g01161 630 SMART rrm2_1 21 94 IPR003954 GO:0003676
Rops5g01161 630 SMART rrm2_1 200 272 IPR003954 GO:0003676
Rops5g01161 630 SMART rrm2_1 304 376 IPR003954 GO:0003676
Rops5g01161 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 373 IPR000504 GO:0003723
Rops5g01161 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Rops5g01161 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 92 IPR000504 GO:0003723
Rops5g01161 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Rops5g01161 630 CDD RRM4_I_PABPs 302 380 - -
Rops5g01161 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Rops5g01161 630 FunFam Polyadenylate-binding protein 533 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01161 Rops-Chr5 24662532 24666606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01161 19 621 Eukaryotic Initiation Factors Gene Family AT1G71770 59.194 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01161 K13126 - gmx:100783163 998.038