Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01159 ATGAGAAGAAGTGGCAGAGAGCTTATGAGACTCTCTTTTTCTCTGCGCTCCTCTGTGAAGCATCATTATCCACCAGCAAAATCAGCATCACGCACTTCTAGTTTTCAAGTGTCAAGCACTTTCTCATCATCTTCCAACTCCCAAAGGGATTCACTGGTTTTGGAACAGTTCAGACAAAGGAAACTCAAAGGGTCCTCAAGAGACTCAAAGGCTATCCCCCAAGTGTCATCTTCAGTTGAGTCTAGTTTGGATTCTGCTACTACTGCTGAGAATGTGGACCAAAAGGGTTTGCAGAATGAGAGTGAAGCCACTATGGTGGTTGCCAACTTTAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCTTGGATGGGATTGGTGATTTTGTTCCAAGTGAGATACAGTGTGTGGTTATTCCTGCTATTTTGGAAGGGAAGAGTGTGATATTGAGTTCACCACCTGAGCCTGATAGGACCTTGGCTTACTTGTTACCCCTTATTCAGCTGCTAAGACGGGATGGAGAGTTGCTTGGTTTTAATTCAAAGCATCCCCGAGCCATTGTGCTTTGTGCTTCAGAGGAGAAAGCTGCACAGTGCTTTAATGCTGCAGGATATATCATCCATAATGCAGAATTGAAATCTACAAAGAATTGTGCTTCACCTGATAATGAAAATTCAAATGCCTCAATTGGTCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGAGGGGATTGTTGTTCCTGCTGAATTGAGATACTTGGTATTGGATGAGGCAGATTGCATGCTTGGTAGAGGCCTTGGTCCTGAAATCCATAAAATCCTCAAACCATTACAAGATCACGAATCAAAATCTCCTGATGAAAGATTGCAAACTATTTTGGCAATGTCAACAATTGCTGAGGTTTTGGGTGAACAATCCCCCCTTGTAAAGCATCTGAAGCATGATCATGGAGGAAATATTTCTGCAATGTCTTTAGAAATGGAGCAAACAGAAGTGTTTCATTTTACTGAGTCTCTGGATGGTCTTAGGAAAAAATTGGCAGAGGCCATGGATTCACTTTTGAAATGA 1080 0.4222 MRRSGRELMRLSFSLRSSVKHHYPPAKSASRTSSFQVSSTFSSSSNSQRDSLVLEQFRQRKLKGSSRDSKAIPQVSSSVESSLDSATTAENVDQKGLQNESEATMVVANFKELGVSEELVEVLDGIGDFVPSEIQCVVIPAILEGKSVILSSPPEPDRTLAYLLPLIQLLRRDGELLGFNSKHPRAIVLCASEEKAAQCFNAAGYIIHNAELKSTKNCASPDNENSNASIGLMIGTPCEILQYIEEGIVVPAELRYLVLDEADCMLGRGLGPEIHKILKPLQDHESKSPDERLQTILAMSTIAEVLGEQSPLVKHLKHDHGGNISAMSLEMEQTEVFHFTESLDGLRKKLAEAMDSLLK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01159 359 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 34 303 - -
Rops5g01159 359 Gene3D - 309 359 - -
Rops5g01159 359 MobiDBLite consensus disorder prediction 69 95 - -
Rops5g01159 359 SMART poly_2 298 359 IPR002004 GO:0003723
Rops5g01159 359 SUPERFAMILY PABC (PABP) domain 304 355 IPR036053 GO:0003723
Rops5g01159 359 SMART ultradead3 127 334 IPR014001 -
Rops5g01159 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 303 IPR027417 -
Rops5g01159 359 Gene3D - 69 308 IPR027417 -
Rops5g01159 359 Pfam DEAD/DEAH box helicase 133 300 IPR011545 GO:0003676|GO:0005524
Rops5g01159 359 MobiDBLite consensus disorder prediction 19 45 - -
Rops5g01159 359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 320 IPR014001 -
Rops5g01159 359 MobiDBLite consensus disorder prediction 27 45 - -
Rops5g01159 359 MobiDBLite consensus disorder prediction 64 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01159 Rops-Chr5 24653099 24656161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01159 292 357 Eukaryotic Initiation Factors Gene Family AT2G23350 42.857 1.43e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01159 - - vra:106768009 478.404