Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01158 ATGCTCCTCAACCTCAAAGGATCGCTCTATCTCAGCCTAAAACCCCAAAGCAGAGTTAAGCGCTGCCACAGCACAAGAACAGGTCCTTCAATGGCGGGAGCTACAGGAAGAACCCTTTTCTCCCTCTCTCACTCTTCTCCCTTCACACGCCTCTCTCATCACGCCAAATGCTTCCCATTTCTCACTCATTCGAAGCCCACCATCACCGTTTTGCCACGGTTCAGGCCTCTCTGTTCCATCACCGCTGCACCAGAAGCCGTCGACCCTGACCAGATGAAACACTCCATGCTCCTCGAGAGGCTCAGAATGAGGCACCTCAAGGACAGTGCCAAGACCCCAGAAGCCAAGAATCCCTCAAAGAACGGGGGTGGTGGTGAGAGTGAGAGTGGTGAGGTGAGGAAGAAATCTGAGGGGCAGAAGAAGAAGGTGGTTGTTGGGAGTTTTGAGGAGTTGGGACTTAGTGATGAGGTTATGGGGACTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATCGGTGTCCCTGCTGTGTTGGAAGGGAAGAATGTGGTTTTGGGGTCTCATACTGGGTCTGGAAAGACTCTGGCTTACTTGCTCCCAATTGTTCAGTTGCTAAGACGGGATGAGCAATTGAATGGAATACTGTTGAAGCCTAGGCGTCCTCGAGCTGTTGTGCTGTGCCCTACGAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCACAGGAGGATTCTCTTAATAACCCCATCGATATGGTAGTTGGAACCCCTGGCAGGATTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCTGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAAACATCGTGCTTCAAAATCTGATGGCTTAGGTTTTCAGACTGTCTTGGTCACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGAACATCTGCACACATCAACGCTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAGCTTTCAGGTTCTGATAACAAGCTGGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCAAAGGGGAACAGGGTGATGGTTTTCTGCAATACATTGGATTCAAGCCGTGCTGTGGACCACTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGGGAGGTACCAGCTGAGCAAAGGGTTGAAAACCTCAGAAAGTTTAAGAGCAACAGTGAAGATTGCCCCACATTGGTTTGCACAGACTTGGCTGCAAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACTAGTTTAGTTGCTAAAAAGAACTTGATGTTAGCGACCAAAATAGAGGAGGCAATAAAGAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGCGTCCGAAGGGACATTACCAGGAACCAAATCACTGAGCAGAGGGGAAAGAACAAAAATTTGATTAAAGTTTCAAAAGTTAAGGACAAATCTGGTGGCCGTGCCAGTTCCGGAAATACCAAGTCAGCTATGAAATCTGGTAAAGGATCATCACCAGCAAAATCTATGAAGAAAGGGATTAATGTTTCAAAATCTGTAAAATCTTCCAGTACAGGGGGCGGAGTTCATCATCAGATAAGAAGCAATTGCTTTAGTGAATTGAATTGGGGTCATATTGTACTGAGTAGCATTATACGTGAATAA 1911 0.4594 MLLNLKGSLYLSLKPQSRVKRCHSTRTGPSMAGATGRTLFSLSHSSPFTRLSHHAKCFPFLTHSKPTITVLPRFRPLCSITAAPEAVDPDQMKHSMLLERLRMRHLKDSAKTPEAKNPSKNGGGGESESGEVRKKSEGQKKKVVVGSFEELGLSDEVMGTVREMGIEVPTEIQCIGVPAVLEGKNVVLGSHTGSGKTLAYLLPIVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKHRASKSDGLGFQTVLVTATMTKAVQKLIDEEFQGIEHLHTSTLHKKISSARHDFIKLSGSDNKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSNSEDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKNLMLATKIEEAIKKNESLEAITKESVRRDITRNQITEQRGKNKNLIKVSKVKDKSGGRASSGNTKSAMKSGKGSSPAKSMKKGINVSKSVKSSSTGGGVHHQIRSNCFSELNWGHIVLSSIIRE* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01158 636 MobiDBLite consensus disorder prediction 107 139 - -
Rops5g01158 636 Gene3D - 116 362 IPR027417 -
Rops5g01158 636 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 364 IPR014001 -
Rops5g01158 636 Pfam DEAD/DEAH box helicase 170 353 IPR011545 GO:0003676|GO:0005524
Rops5g01158 636 MobiDBLite consensus disorder prediction 592 611 - -
Rops5g01158 636 MobiDBLite consensus disorder prediction 568 585 - -
Rops5g01158 636 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Rops5g01158 636 SMART ultradead3 165 384 IPR014001 -
Rops5g01158 636 CDD SF2_C_DEAD 377 509 - -
Rops5g01158 636 Gene3D - 370 599 IPR027417 -
Rops5g01158 636 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 542 IPR001650 -
Rops5g01158 636 CDD DEADc 157 356 - -
Rops5g01158 636 MobiDBLite consensus disorder prediction 562 611 - -
Rops5g01158 636 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 90 537 - -
Rops5g01158 636 SMART helicmild6 418 500 IPR001650 -
Rops5g01158 636 Pfam Helicase conserved C-terminal domain 389 500 IPR001650 -
Rops5g01158 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 512 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01158 Rops-Chr5 24639705 24650708 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01158 145 522 Eukaryotic Initiation Factors Gene Family AT3G19760 26.753 6.79e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01158 - - gmx:100805709 868.996