Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01154 ATGGAATACCATGATGGGCTACAAGGCCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCATCCAAACCTTGTCAAACTCGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGAAGCCTCGAAAACCACTTATTTAGGAGATCCCTGCCTTTTCCATGGTCCAATAGGATGAACATTGCACTAGGAGCTGCTAAGGGTCTTGTTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGAGATTTTAAAGCTTCAAATATACTACAATGCCAAGCTCTCGGGCTTTGGTCTTGTCAAAGAAGGTGA 348 0.4167 MEYHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPFPWSNRMNIALGAAKGLVFLHEEAERPVIYRDFKASNILQCQALGLWSCQRR* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01154 115 Gene3D Transferase(Phosphotransferase) domain 1 49 108 - -
Rops5g01154 115 Pfam Protein tyrosine and serine/threonine kinase 10 104 IPR001245 GO:0004672|GO:0006468
Rops5g01154 115 SUPERFAMILY Protein kinase-like (PK-like) 6 102 IPR011009 -
Rops5g01154 115 PANTHER OS01G0588500 PROTEIN-RELATED 5 102 - -
Rops5g01154 115 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g01154 115 Gene3D Phosphorylase Kinase; domain 1 2 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01154 Rops-Chr5 24599177 24599524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01154 5 102 Glycoside Hydrolase AT3G07070 57.426 1.48e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops5g01154 PK_Tyr_Ser-Thr 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01154 - - egt:105974701 197.593