Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01149 ATGAAGCACTCCATGCTCCTCGAGGGGATCAGAGTGAGGCACCTCAAGGACAGTGCCAAGACCCCAGAAGCCAAGAATCCCTCAAAGAAGGGTGGTGGTGGTGAGAGAGAGAGTGGTGAGGTGAGGAAGAAATCTGAGGGACAGAAGAAGAAGGTGGTTGTTGGGAGTTTTGAGGAGTTGGGACTTAGTGATGAGGTTATGGGAACTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTCCCTGCTGTGTTGGAAGGGAAGAATGTGGTTTTGGGGTCTCATACTGGGTCTGGAAAGACTCTGGCTTACTTGCTCCCAATTGTTCAGCTATCTATTGGGGGCCGACTTAGGCCACAGGAGGATTCTCTTAATAACCCCATCGATATGGTAGTTGGAACCCCTGGCAGGATTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCTGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAAATTCTGGGCCCATTAAAACATCGTGCTTCAAAATCTGATGGCTTAGGTTTTCAGACTGTCTTGGTCACTGCAACCATGACAAAGGTATGA 627 0.4705 MKHSMLLEGIRVRHLKDSAKTPEAKNPSKKGGGGERESGEVRKKSEGQKKKVVVGSFEELGLSDEVMGTVREMGIEVPTEIQCIGVPAVLEGKNVVLGSHTGSGKTLAYLLPIVQLSIGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKILGPLKHRASKSDGLGFQTVLVTATMTKV* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01149 208 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 55 83 IPR014014 GO:0003724
Rops5g01149 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 207 IPR027417 -
Rops5g01149 208 Gene3D - 9 117 IPR027417 -
Rops5g01149 208 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 208 IPR014001 -
Rops5g01149 208 Gene3D - 118 208 IPR027417 -
Rops5g01149 208 MobiDBLite consensus disorder prediction 1 48 - -
Rops5g01149 208 CDD DEADc 66 207 - -
Rops5g01149 208 Pfam DEAD/DEAH box helicase 79 116 IPR011545 GO:0003676|GO:0005524
Rops5g01149 208 SMART ultradead3 74 208 IPR014001 -
Rops5g01149 208 Pfam DEAD/DEAH box helicase 119 206 IPR011545 GO:0003676|GO:0005524
Rops5g01149 208 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01149 Rops-Chr5 24186321 24187571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01149 54 205 Eukaryotic Initiation Factors Gene Family AT3G19760 27.041 3.70e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01149 - - pcin:129297913 303.138