Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01148 ATGCAGGCTGTGCAAAAGCTGATCGATGAGGAGTTTCAAGGCATTGAACATCTGCACACATCAACGCTGCATAAAAAGATTTCTTCTGCTCGTTATGATTTTATTAAGCTTTTAGGTTCTGATAACAAGTTGGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCAAAGGGGAACAGGGTGATGGTTTTCTGCAATACATTGGATTCAAGCCGTGCTGTGGACCACTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGGGAGGTACCAGCTGAGCAAAGGGTTGGAAACCTCAGAAAGTTTAAGAGCAACAGTGAAGATTGCCCCACATTGGTTTGCACAGACTTGGCCGCAAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGAAAAAGGGAAAGTAACTAGCTTTGTTGCTAAAAAGAACTTGATGTTGGCGACTAAAATAGAGGAGGCAATAAAGAAGAATGAGAGTTTAGAGGCTATCACTAAAGAAAGCGTCCGAAGGGACATTACCAGGAACCAAATCACTGAGCAGAGGGGAAAGAACAAAAAATTGATTAAAGTTTCAAAAGTTAAGGACAAATCTGGTGGCCGTGCCAGTTCCGGAAATACCAAGTCAGCTATGAAATCTGCTAAAGGATCATCACCAGCAAAATCTATGAAGAAAGGGATTAATCTTTCAAAATCTGTAAAATCTTCCAGTACAGGTAACTTGAGAAAAGCTTCTTCAGAGAATAAGCAAACAAATAAAAGGAGGACCAGTGCCACCAATTCTCCAAATTCTAAACTCAATGTTGTGGGCTTTAGGGGGCGGAATTCATCATCAGATAAGAAGCAATTGCTTTAG 924 0.4156 MQAVQKLIDEEFQGIEHLHTSTLHKKISSARYDFIKLLGSDNKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVGNLRKFKSNSEDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGEKGKVTSFVAKKNLMLATKIEEAIKKNESLEAITKESVRRDITRNQITEQRGKNKKLIKVSKVKDKSGGRASSGNTKSAMKSAKGSSPAKSMKKGINLSKSVKSSSTGNLRKASSENKQTNKRRTSATNSPNSKLNVVGFRGRNSSSDKKQLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01148 307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 189 IPR027417 -
Rops5g01148 307 Gene3D - 32 284 IPR027417 -
Rops5g01148 307 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 191 - -
Rops5g01148 307 SMART helicmild6 72 154 IPR001650 -
Rops5g01148 307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 43 196 IPR001650 -
Rops5g01148 307 CDD SF2_C_DEAD 40 163 - -
Rops5g01148 307 MobiDBLite consensus disorder prediction 198 220 - -
Rops5g01148 307 MobiDBLite consensus disorder prediction 246 307 - -
Rops5g01148 307 MobiDBLite consensus disorder prediction 198 307 - -
Rops5g01148 307 MobiDBLite consensus disorder prediction 222 239 - -
Rops5g01148 307 Pfam Helicase conserved C-terminal domain 43 154 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01148 Rops-Chr5 24157269 24164831 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01148 59 176 Eukaryotic Initiation Factors Gene Family AT3G19760 31.967 1.11e-13 69.3