Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01125 ATGACTGGGAACTGGCGAAATAAGCATCCTCTGCCCACTGCAAACCGTTTCTTTAAGATTATTCTGAGAACAAGTCTTCAACATGGAAAGCTTAAGCTTCCAAAAGATTTCACTAGGAAATATGGTGGTTGCATGTCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTATGCTGGACTAAACATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTTTATATTACTCCATAGATCAAGGGCATATGGTATTGTTTGAATACAAGCACAGTTCTCCTCATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATAGAATATCCTTTCCATGGCTGTCAAGAAGAACATGACAACCTTGAACAGATTAGTGATGATGACTCGGTTGAAATTTTAGATGAGCTACCTCCATTTCAAAAGACTAGAATGAAATCACCAATGTCATGTCCTCAACCAAGCAAGAAATTGAGAACCGGCACTGGTGGAGATGTTGGAAGAAGCTCCCAATTGCAAAATTTTCCTAAACATGACCTAAGTAATCAGTCTCAAGGGACAGACTTTGAGAAGTCAACATTTGCAATGGATGAGGATATTGTTAGTGCCACTGAATGCCTAAAAGTGGAGCAGTTAACTTCTACAATTATTGAAGCTTTAAACAGAGCCACATACTTCAAATCCAAAAATCCCTTTTTCATTGTTGTCATGAAACCTTCCGATGTTGATGCATACTTGGAAATCCAGAATGTCCCATCACAATTTGCAGAAAAATATTTAAAGAAAATTCAACAGGATATCATTCTTCAGGGCTTGGATGGGAGAACTTGGCCTGCTAGATATGCTCTTGGCAAAGTTGATGCTGGATGGAAGAAATTTGCATCAGATAACAATTTGAAAGTGGGGGATGTTTGCCTCTTTGAGCTGACCAAGAGCCGAGACCTTTCTTTGAAAGTATTATCTTTCAACTTGGGGAAGAATCACATTCCCCTCCACCACAAGGTAATCCAAGTTGGTCTTTCTTTCAAGAGATTACTCTTATTGATAGCTGACCTCAGTTAA 1080 0.3898 MTGNWRNKHPLPTANRFFKIILRTSLQHGKLKLPKDFTRKYGGCMSNPMFLKPPDGTEWEVCWTKHDGDIWFQKGWKEFALYYSIDQGHMVLFEYKHSSPHFEVHIFDKSTLEIEYPFHGCQEEHDNLEQISDDDSVEILDELPPFQKTRMKSPMSCPQPSKKLRTGTGGDVGRSSQLQNFPKHDLSNQSQGTDFEKSTFAMDEDIVSATECLKVEQLTSTIIEALNRATYFKSKNPFFIVVMKPSDVDAYLEIQNVPSQFAEKYLKKIQQDIILQGLDGRTWPARYALGKVDAGWKKFASDNNLKVGDVCLFELTKSRDLSLKVLSFNLGKNHIPLHHKVIQVGLSFKRLLLLIADLS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01125 359 ProSiteProfiles B3 DNA-binding domain profile. 16 110 IPR003340 GO:0003677
Rops5g01125 359 MobiDBLite consensus disorder prediction 149 192 - -
Rops5g01125 359 PANTHER B3 DOMAIN-CONTAINING 12 318 - -
Rops5g01125 359 SMART B3_2 239 329 IPR003340 GO:0003677
Rops5g01125 359 SMART B3_2 17 110 IPR003340 GO:0003677
Rops5g01125 359 SUPERFAMILY DNA-binding pseudobarrel domain 233 329 IPR015300 -
Rops5g01125 359 SUPERFAMILY DNA-binding pseudobarrel domain 14 110 IPR015300 -
Rops5g01125 359 Gene3D - 12 111 IPR015300 -
Rops5g01125 359 Pfam B3 DNA binding domain 239 326 IPR003340 GO:0003677
Rops5g01125 359 Pfam B3 DNA binding domain 23 109 IPR003340 GO:0003677
Rops5g01125 359 MobiDBLite consensus disorder prediction 170 192 - -
Rops5g01125 359 Gene3D - 221 330 IPR015300 -
Rops5g01125 359 CDD B3_DNA 237 329 IPR003340 GO:0003677
Rops5g01125 359 CDD B3_DNA 16 108 IPR003340 GO:0003677
Rops5g01125 359 ProSiteProfiles B3 DNA-binding domain profile. 240 329 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01125 Rops-Chr5 23239063 23240634 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01125 17 330 B3 DNA Binding Superfamily AT3G18990 33.923 1.22e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops5g01125 B3 1.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01125 - - lja:Lj0g3v0181669.1 370.163