Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01122 ATGACACTAAAGAGCCATAAGCTTCCAAAAGATTTCACTAGGATATATGGTGGTTGCATGTCAAACCCAATGTTTCTCAAGCCTCCAGATAGCACTGAATGGGATGTATGCTGGACTAAACTTGATGGTGATATTTGGTTTCAAAAGGGTTGGAAACAATTTGCTTTATATTACTCCTTAGATCATGGGCATATGGTATTGTTTGAATACAAGCACAGTTCTCCTCATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATAGAATATCCTTTCCATGGCTGTCAAGAAGAACATGACAACCTTGAACAGATTAGTGATGATGACTCGGTTGAAATTTTAGATGAGCTACCTCCATGTCAAAAGACTAGACTGAAATCACCAATGTCATGTCCTCAACCAAGCAAGAAATTGAGAACCGGCACTGGTGGAGATGTTGGAAGAAGCTCCCAATTGCAAAATTTTCCTAAACATGACCTAAGCAATCAGTCTCAAGGACAGACTTTGAGAAGTCAACATTTGCAATGGATGAATGTCCCATCACAATTTGCAGAAAAAGATTTGAAGAAAAATCAACAGGATATCATCCTTCAGGGCTTGGATGGGAGAACTTGGCCTGCTAGATATGCTCTTGGCAAAGTTGATGCTGGATGGAAGAAATTTGCATCAGATAACAATTTGAAAGTGGGGGATGTTTGCCTCTTTGAGCTGATCAAGAGCCGAGACCTTTCTTTGAAAGTATTAATCTTTCAACTTGGGGAAGAATCACATTCCCCTCCACCACAAGATCTTGGAAGAATCCTGGACCTGGATGTTGAAAGTAAAACTACTATTACCTGTAAAGGTGGGAAGGCAACTCAAAGAACTTCACTGCCGATTAGTCCCCGTTCCTTCACAAATGAAGGTCTCAAAGAAGCTAATAAATTCACCTCGGAAAATCCCTTTTTCACAGTCATTATAAAGCCACATACTCGATGGGATTACAAACCGCTGGTACCAAATGCCTTCTCCAGAAAGTACTTAGATAAAAATATGCAGATTGTCAGGTTACATTTTGCAAAGAAATTGTGGCCTGTCAAGGTGCTCCATTATCCATCTGGAGCTTCAGCCAAGTTGTCAAGTGGTTGGACCCAATTTGTGGGAGAAAGTAAATTACTAAAAGGAGATGTTTGTGTCTTCGAGCTCATTAACAAGGAAGATGCGGTGCTTGATGTTCATATTTTCAGAGGCCACTCTTAG 1242 0.4018 MTLKSHKLPKDFTRIYGGCMSNPMFLKPPDSTEWDVCWTKLDGDIWFQKGWKQFALYYSLDHGHMVLFEYKHSSPHFEVHIFDKSTLEIEYPFHGCQEEHDNLEQISDDDSVEILDELPPCQKTRLKSPMSCPQPSKKLRTGTGGDVGRSSQLQNFPKHDLSNQSQGQTLRSQHLQWMNVPSQFAEKDLKKNQQDIILQGLDGRTWPARYALGKVDAGWKKFASDNNLKVGDVCLFELIKSRDLSLKVLIFQLGEESHSPPPQDLGRILDLDVESKTTITCKGGKATQRTSLPISPRSFTNEGLKEANKFTSENPFFTVIIKPHTRWDYKPLVPNAFSRKYLDKNMQIVRLHFAKKLWPVKVLHYPSGASAKLSSGWTQFVGESKLLKGDVCVFELINKEDAVLDVHIFRGHS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01122 413 Gene3D - 298 412 IPR015300 -
Rops5g01122 413 Gene3D - 150 254 IPR015300 -
Rops5g01122 413 Gene3D - 1 86 IPR015300 -
Rops5g01122 413 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
Rops5g01122 413 SMART B3_2 316 412 IPR003340 GO:0003677
Rops5g01122 413 SMART B3_2 2 85 IPR003340 GO:0003677
Rops5g01122 413 SMART B3_2 165 254 IPR003340 GO:0003677
Rops5g01122 413 CDD B3_DNA 174 251 IPR003340 GO:0003677
Rops5g01122 413 CDD B3_DNA 316 410 IPR003340 GO:0003677
Rops5g01122 413 SUPERFAMILY DNA-binding pseudobarrel domain 310 410 IPR015300 -
Rops5g01122 413 MobiDBLite consensus disorder prediction 123 170 - -
Rops5g01122 413 SUPERFAMILY DNA-binding pseudobarrel domain 174 252 IPR015300 -
Rops5g01122 413 ProSiteProfiles B3 DNA-binding domain profile. 178 254 IPR003340 GO:0003677
Rops5g01122 413 ProSiteProfiles B3 DNA-binding domain profile. 316 412 IPR003340 GO:0003677
Rops5g01122 413 Pfam B3 DNA binding domain 7 84 IPR003340 GO:0003677
Rops5g01122 413 Pfam B3 DNA binding domain 174 251 IPR003340 GO:0003677
Rops5g01122 413 Pfam B3 DNA binding domain 317 411 IPR003340 GO:0003677
Rops5g01122 413 SUPERFAMILY DNA-binding pseudobarrel domain 7 85 IPR015300 -
Rops5g01122 413 CDD B3_DNA 8 83 IPR003340 GO:0003677
Rops5g01122 413 PANTHER B3 DOMAIN-CONTAINING 314 407 - -
Rops5g01122 413 MobiDBLite consensus disorder prediction 145 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01122 Rops-Chr5 23144984 23148168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01122 303 410 B3 DNA Binding Superfamily AT3G18990 37.838 3.84e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops5g01122 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01122 - - lja:Lj5g3v0508090.1 431.795