Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01120 ATGTCTGGCAACTCAAATTGCGCTGTTTACATAGGCAATCTGGATGAGAGGGTGACCGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGTACATTCCTAAAGATAAGGAATCCGAGAAACCAAAAGGTTTTGCCTTCGCAGAATATGAAACTGAAGAGATTGCAGGCTATGCTGTCAGGCTTTTCTCGGGCCTTGTAACACTGTACAACAGAACACTGAAGTTTGCGATATCAGGGAAAGACAAAGTGGCCGCTAATGGTTCTACAGCAATTACACCCACATCAAATTCTTCTCAACGACAGAGGCCCCCAGTGCCAATAAATAATTCAGAAAATTTTCAGCACTCTGGTAGGCTATCAGCAACTGACCGATTTTCAGATCATGCAGCAAATTATTCCCAAGTTCCTCCTCATCGTGTAACTGACCAATCTAGTGGGCATGGATCTCACAACAGTGGAAACAATTATGAATATAGTCGTAGAGCTTTTGGGGCATCATTGGATAGCATTAGCCGTTCTAGGTCACGCCGCTCTGATAGATGTAGCCCGATATCTTACCCATCTTACTAA 588 0.4337 MSGNSNCAVYIGNLDERVTDRVLYDILIQAGRVVDLYIPKDKESEKPKGFAFAEYETEEIAGYAVRLFSGLVTLYNRTLKFAISGKDKVAANGSTAITPTSNSSQRQRPPVPINNSENFQHSGRLSATDRFSDHAANYSQVPPHRVTDQSSGHGSHNSGNNYEYSRRAFGASLDSISRSRSRRSDRCSPISYPSY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01120 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Rops5g01120 195 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Rops5g01120 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Rops5g01120 195 MobiDBLite consensus disorder prediction 94 121 - -
Rops5g01120 195 SMART rrm1_1 8 82 IPR000504 GO:0003723
Rops5g01120 195 Gene3D - 2 94 IPR012677 -
Rops5g01120 195 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 192 - -
Rops5g01120 195 MobiDBLite consensus disorder prediction 140 195 - -
Rops5g01120 195 MobiDBLite consensus disorder prediction 142 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01120 Rops-Chr5 23125213 23132141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01120 7 87 Eukaryotic Initiation Factors Gene Family AT1G49760 28.395 5.02e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01120 K12831 - gmx:100803118 311.227