Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01119 ATGGTGAGAGTGATGAAGAGTAGGAAGGTGAAAATAGAAATGGTGGATTGTGATTTAGAGAGTAGAGCATTGGAGTTGGTTATCACTTCCGCGCGTTTTCCCGAAACAACTCGAATCCTTCCCATCACTGATAGCAGAAGTAATACATCTGCTGCACAATGGGGAATTCGTCCTCAGCTATTACTGAGGTCCAGTATGACAGGCAAGGTTGCGTCATCCAGTCACAGTGTTACAAGCAGGGTAAGCTTTATGGCTGCCCCAAGTTCAAGCTTTTTGTCTCAGGATTCCTTGCATAAACTATTTAATGCTGGTTTGTCTCATACTTTTCATCGTCACAAGGGATCAAGGTTGATTGTTAGAGCAGATGCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGTAGTTATCATCCAGATGTGAACAAAGAACCTGAAGCGGAAAATAAATTTAAGGAGATCAGCAATGCATATGAGGTCTTGTCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGTCATTGTTTGAGGGGATGAATCGTGGTGCAAGTCCCAGGGGTTCTTGGAATGGAGCAATTGATGGCGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCGTAGAAAAAGAGATAGAGATAAGCCGATTAGAGACCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACATGTGGAGGTCAAGGCCGAGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACGTGCTCTTCATGCAATGGGACTGGTGAAATTTCAACACCTTGCAGTACATGTTCCGGGGATGGTCGAGTGAGGAAAACGAAGCGGATAAGTCTCAAGGTCCCAGCTGGTGTGGACTCTGGCAGCCGTTTAAGGGTCCGAAACGAAGGGAATGCCGGAAGGCGAGGTGGTTCTCCTGGTGACCTCTTTGTTGTCATTGAGGTTATCCCAGATCCTGTCCTTAAACGAGATGACACCAACATTTTATATACCTCCAAGGTTTCTTACATTGATGCAATCTTGGGGACTACAATTAAGGTTCCTACAGTAGATGGCATGGTGGATTTGAAAATCCCAGCTGGGACTCAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCCTGCTGAATAAAAACAATATGAGAGGTGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGATTGAGCTCTGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACTGGTAGGAGATAA 1440 0.4403 MVRVMKSRKVKIEMVDCDLESRALELVITSARFPETTRILPITDSRSNTSAAQWGIRPQLLLRSSMTGKVASSSHSVTSRVSFMAAPSSSFLSQDSLHKLFNAGLSHTFHRHKGSRLIVRADADYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPEAENKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGASPRGSWNGAIDGEDEYYSLVLNFKEAVFGVEKEIEISRLETCGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTSKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLNKNNMRGDQLVRVQVEIPKRLSSDERKLIEELADLSKGKTATGRR* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01119 479 PRINTS DnaJ domain signature 144 159 IPR001623 -
Rops5g01119 479 PRINTS DnaJ domain signature 180 199 IPR001623 -
Rops5g01119 479 PRINTS DnaJ domain signature 160 180 IPR001623 -
Rops5g01119 479 PRINTS DnaJ domain signature 126 144 IPR001623 -
Rops5g01119 479 CDD DnaJ_zf 262 325 IPR001305 GO:0031072|GO:0051082
Rops5g01119 479 CDD DnaJ 124 177 IPR001623 -
Rops5g01119 479 Pfam DnaJ domain 124 185 IPR001623 -
Rops5g01119 479 NCBIfam molecular chaperone DnaJ 124 468 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Rops5g01119 479 FunFam Chaperone protein dnaJ 1, mitochondrial 372 479 - -
Rops5g01119 479 FunFam Molecular chaperone DnaJ 254 330 - -
Rops5g01119 479 Gene3D - 232 367 - -
Rops5g01119 479 Pfam DnaJ central domain 262 325 IPR001305 GO:0031072|GO:0051082
Rops5g01119 479 CDD DnaJ_C 233 455 - -
Rops5g01119 479 Gene3D - 262 325 - -
Rops5g01119 479 ProSitePatterns Nt-dnaJ domain signature. 165 184 IPR018253 -
Rops5g01119 479 Gene3D DnaJ domain 121 224 IPR036869 -
Rops5g01119 479 FunFam Chaperone protein dnaJ A6 chloroplastic 121 224 - -
Rops5g01119 479 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 79 475 - -
Rops5g01119 479 Pfam DnaJ C terminal domain 237 452 IPR002939 -
Rops5g01119 479 SUPERFAMILY HSP40/DnaJ peptide-binding domain 230 385 IPR008971 GO:0006457|GO:0051082
Rops5g01119 479 SUPERFAMILY Chaperone J-domain 121 216 IPR036869 -
Rops5g01119 479 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 249 329 IPR036410 -
Rops5g01119 479 Hamap Chaperone protein DnaJ [dnaJ]. 121 475 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Rops5g01119 479 SMART dnaj_3 123 180 IPR001623 -
Rops5g01119 479 SUPERFAMILY HSP40/DnaJ peptide-binding domain 377 463 IPR008971 GO:0006457|GO:0051082
Rops5g01119 479 ProSiteProfiles dnaJ domain profile. 124 188 IPR001623 -
Rops5g01119 479 ProSiteProfiles Zinc finger CR-type profile. 249 330 IPR001305 GO:0031072|GO:0051082
Rops5g01119 479 Gene3D - 372 478 - -
Rops5g01119 479 FunFam Putative Mitochondrial DnaJ chaperone 318 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01119 Rops-Chr5 23111011 23124111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01119 125 187 C2H2 Transcription Factor Family AT1G74250 44.928 1.04e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01119 K03686 - gmx:100811006 781.171