Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01117 ATGGCTAGGGTTAGATCTCCTTCTTCTTTATACTCATTGCTCTTTATTTCCTCACTTGTATTTGCTTCTCAAATCCTTGTCTCCTCTGAGAAAGTTTCAAGGCCTCCCATTGTGAAGGGACTAGATTGGAATTACTATTTGTTGACATGTCCTAGGGTTGAAAGGATTGTGAGGAAACATCTTGAGGATGTCTTCCAGAAGAACGATGGCATAGCTCCTGGCATACTTCGGCTTCTTTTCCATGATTGCTTTCCTCAGGGATGCGATGCATCTGTATTGTTGAACACTGTTGGAGACCAAGAAGATGAAAAGACACACCCTGCCAACATAGGTATAAGACAAGAAGCACTTCAAACCATTGAAAACCTTCGAGCTCTTATCGGTAAGCAGTGTCTGAGGGTTGTGTCCTGCGCAGACATCCTCGTTATCGCGGCACGCGAAGCTGTTCGCCAATTAGGAGGTCCTGATTTTGATGTACCACTAGGAAGAAAAGACGGTCCGGCACCTAACTTTAACGCAGCAAACAATCTTCCAGCACCATTTTTCCGAACAGAACAACTAATTGAGAGTTTCAAAAGCAGAAATTTCGACGCCACCGAAATGGTTGCACTCTCAGGTGCCCACACTTTTGGTCGAGCCCACTGTCCCTCATTAGCCAACAGGACCATTGAATCAGACCCACCAATAGACCCACAATTCAAGAAACAACTCGAAACTGCATGCCCAGCTAACGATCCCAGTGATGACAAAACCGTTCTCTTAGACATCAGGACTCCCTCCAAGTTCGATAACATATATTACATCAACCTCTTAAACAAACAGGGTGTGTTCACCTCTGACCAGGACATAGCAGAAAAATCGGAAACTAAGGAAACGGTGAACCGCTTTGCCTCCAACCAGAAAGAGTTTTTTGACAAATTTGCCAATGCTTTTGTCAAGCTGAGCCAGTTGGATGTGTTGACTGGGAATAATGGGGAAGTTCGCAAGTCATGCTTTTTTCCAAATAGCATGAAATCTCCCATTGCATCTGTGGTGGAAGAGGTTGTGGAATTGGCTGAGAACCTCTAA 1068 0.4457 MARVRSPSSLYSLLFISSLVFASQILVSSEKVSRPPIVKGLDWNYYLLTCPRVERIVRKHLEDVFQKNDGIAPGILRLLFHDCFPQGCDASVLLNTVGDQEDEKTHPANIGIRQEALQTIENLRALIGKQCLRVVSCADILVIAAREAVRQLGGPDFDVPLGRKDGPAPNFNAANNLPAPFFRTEQLIESFKSRNFDATEMVALSGAHTFGRAHCPSLANRTIESDPPIDPQFKKQLETACPANDPSDDKTVLLDIRTPSKFDNIYYINLLNKQGVFTSDQDIAEKSETKETVNRFASNQKEFFDKFANAFVKLSQLDVLTGNNGEVRKSCFFPNSMKSPIASVVEEVVELAENL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01117 355 PANTHER - 24 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 SUPERFAMILY Heme-dependent peroxidases 40 335 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 Gene3D - 44 331 - -
Rops5g01117 355 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 153 168 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 253 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 199 211 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Plant peroxidase signature 134 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 ProSiteProfiles Plant heme peroxidase family profile. 40 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 Pfam Peroxidase 57 299 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 CDD secretory_peroxidase 40 333 IPR033905 GO:0004601|GO:0042744
Rops5g01117 355 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Haem peroxidase superfamily signature 255 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Haem peroxidase superfamily signature 153 165 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 PRINTS Haem peroxidase superfamily signature 135 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops5g01117 355 FunFam Peroxidase 178 314 - -
Rops5g01117 355 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601
Rops5g01117 355 ProSitePatterns Peroxidases proximal heme-ligand signature. 200 210 IPR019793 -
Rops5g01117 355 Gene3D Peroxidase, domain 2 179 315 - -
Rops5g01117 355 FunFam Peroxidase 44 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01117 Rops-Chr5 23082815 23086269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01117 1 352 Peroxidase AT1G71695 45.810 1.15e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01117 K00430 - gmx:100795412 447.588