Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01112 ATGTCCTTGTTAAACGTGGCGCACCAAAGAGGGTCAAGTGAGTTCATCAGGTTCATGGAGCAGCATGGCGGCGATGACGAAGGTGATGGTGGAAAATCAATGGCTTCTGAGTTACAAAGAATCAGCCAAGCGATGCAACAAGCGGAGGAAACAACGCAGGATTCATCGGTTGTTTCAGGGTATAACAGGAATAGAGAGTTGAGAGAAATGGTTTCAGCTCTAACACATGTGGCATCAGGGTCTGGCCAAAGTAGCACTGAATTGGGACAAGGAAGTGGTTTTCCTAGGATGTTGGGTTTTGGACATGCATCTTTTTCTCCTTCAGGCGTGCCTTCTTTCTCTTCTTCTTTTTCTGCCTCTTCTGGCCTTGCCTTACCTTCTGGCTCGTGGGTTGGTCACAAAAGAGGGCGTGAAGATGAAAGTTCTAGTGGTGTTTCTCATCAGTTGTTACAACAACAAGCTGTTCCTAGACTCTTCAGAACCGTTGGTGATATCATGGTACCTTCTCAAGGAGATTCATCATCAGTGACAGAAGAATCTCCCACCACCACCACCACCACCTCTGTAGCCGCCTCGGTGACGGCGGCTACACCATCACATGAAGAGGGTGGAGAGAGGAAGAGAAGGTACAGGGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCAGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGAACTTTTGACACAGCAGAAGCAGCAGCAAGAGCATATGATGAAGCAGCATTGAGGTTCAGGGGTAGCAGAGCAAAACTTAACTTCCCAGAAAATGTTAGAACAGTGCCACCACCACAAATTCAAACTTTTCCAGCCACAAGGCTCACCAATTCTGATTCCTCCACCGCTCAATTCCTCCCTGCGCCTCCACAGCCGCCATTCATGCCACAACAACCGCCGCCATTTCAGGTAACCTCTGACTTGATCAGAGACTATTGGGGATATTCTCAGCTTCTACAGAGTTCTAGTGACTTTCAACAACAACAACAACAACAACCTTCTAGTTTGCTTCAACAGTGGTATTATAATTCACAATTGGCAGCACTTCAATCACCTTCTTTGTTATCATCATCACCCTCTTTGTCTTCTTCTTTGTCATCATTTTCACCATCTTCTCAACTTTCCTCTGCTTCATTTCCCCTGTTTTCTTTCCCGCCGCCGGAAAACCTACCTCACGGCGGCGGAAGCGGGTCAGAGTTTCCACCGTCAACGTGGTCAGATACCAGTGGCCATCCACCACCTTATGGTTGA 1281 0.4778 MSLLNVAHQRGSSEFIRFMEQHGGDDEGDGGKSMASELQRISQAMQQAEETTQDSSVVSGYNRNRELREMVSALTHVASGSGQSSTELGQGSGFPRMLGFGHASFSPSGVPSFSSSFSASSGLALPSGSWVGHKRGREDESSSGVSHQLLQQQAVPRLFRTVGDIMVPSQGDSSSVTEESPTTTTTTSVAASVTAATPSHEEGGERKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRTVPPPQIQTFPATRLTNSDSSTAQFLPAPPQPPFMPQQPPPFQVTSDLIRDYWGYSQLLQSSSDFQQQQQQQPSSLLQQWYYNSQLAALQSPSLLSSSPSLSSSLSSFSPSSQLSSASFPLFSFPPPENLPHGGGSGSEFPPSTWSDTSGHPPPYG* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01112 426 MobiDBLite consensus disorder prediction 395 426 - -
Rops5g01112 426 MobiDBLite consensus disorder prediction 130 149 - -
Rops5g01112 426 MobiDBLite consensus disorder prediction 166 212 - -
Rops5g01112 426 Gene3D AP2/ERF domain 208 268 IPR036955 GO:0003700|GO:0006355
Rops5g01112 426 CDD AP2 209 268 IPR001471 GO:0003700|GO:0006355
Rops5g01112 426 SUPERFAMILY DNA-binding domain 209 267 IPR016177 GO:0003677
Rops5g01112 426 MobiDBLite consensus disorder prediction 288 311 - -
Rops5g01112 426 FunFam Ethylene-responsive transcription factor 2 208 267 - -
Rops5g01112 426 ProSiteProfiles AP2/ERF domain profile. 209 266 IPR001471 GO:0003700|GO:0006355
Rops5g01112 426 MobiDBLite consensus disorder prediction 167 195 - -
Rops5g01112 426 Pfam AP2 domain 209 258 IPR001471 GO:0003700|GO:0006355
Rops5g01112 426 MobiDBLite consensus disorder prediction 296 310 - -
Rops5g01112 426 PANTHER DNA-BINDING DOMAIN 177 344 IPR044808 GO:0003700|GO:0009873
Rops5g01112 426 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Rops5g01112 426 PRINTS Ethylene responsive element binding protein signature 232 248 IPR001471 GO:0003700|GO:0006355
Rops5g01112 426 SMART rav1_2 209 272 IPR001471 GO:0003700|GO:0006355
Rops5g01112 426 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01112 Rops-Chr5 22858528 22860838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01112 155 296 AP2-EREBP Transcription Factor Family AT5G61890 46.104 1.29e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g01112 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01112 - - gmx:100804843 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01112 5 22858528 22860838 Rops5g01112 5 22858528 22860838 ECH
Rops8g02396 8 55482894 55484616 Rops5g01112 5 22858528 22860838 PCT
Rops5g01112 5 22858528 22860838 Rops6g02579 6 46447815 46450272 PCT