Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01107 ATGGCTGCTTCAACAATGGCTCTTTCTTCTCCATCCTTTGCTGGGCAGGCAATCAAGCTTGCCCCTTCTTCCCCGGACATTGGCAGTGGAAGGGTCACCATGAGGAAAACAGCAACCAAGTCTGTTTCTTCTAGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCTTTCCCTGGTGAGCCCCCATCCTACCTCACTGGTGAATTCCCTGGTGACTATGGTTGGGACACTGCCGGGCTTTCTGCTGACCCAGAGACATTTGCCAAAAACCGTGAACTTGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCCCTAGGCTGTGTCTTCCCCGAGCTCTTGGCCCGCAACGGTGTCAAGTTTGGTGAAGCCGTATGGTTCAAGGCTGGGTCCCAAATATTCAGTGAGGGTGGGCTTGATTACTTGGGTAACCCAAGCCTGATCCATGCACAAAGCATCCTTGCCATATGGGCCTGCCAGGTCATCTTGATGGGTGCAGTTGAAGGTTACCGTATTGCGGGTGGGCCTCTGGGAGAGGTGACAGACCCACTATACCCAGGAGGGAGCTTTGACCCATTGGGCTTGGCAGATGACCCAGAGGCATTTGCAGAGTTGAAGGTGAAAGAGATAAAGAATGGAAGATTAGCAATGTTCTCAATGTTTGGATTCTTTGTTCAGGCCATTGTGACTGGGAAGGGACCTTTGGAGAATCTTGCTGACCCTGTCAACAACAATGCTTGGGCCTATGCCACCAACTTTGTCCCTGGAAAGTGA 783 0.5236 MAASTMALSSPSFAGQAIKLAPSSPDIGSGRVTMRKTATKSVSSRSPWYGPDRVKYLGPFPGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADPVNNNAWAYATNFVPGK* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01107 260 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Rops5g01107 260 SUPERFAMILY Chlorophyll a-b binding protein 47 257 - -
Rops5g01107 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 260 IPR001344 GO:0009765|GO:0016020
Rops5g01107 260 FunFam Chlorophyll a-b binding protein, chloroplastic 55 253 - -
Rops5g01107 260 Gene3D Chlorophyll a/b binding protein domain 55 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01107 Rops-Chr5 22707962 22708744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01107 1 260 Chloroplast and Mitochondria Gene Families AT1G29930 85.768 1.56e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01107 K08912 - qsu:112030611 508.064