Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01106 ATGGCTGCTTCAACAATGGCTCTCTCTTCTCCATCCTTTGCTGGGCAGGCAATCAAGCTTGCCCCTTCTTCCCAGGAACTTGGCAGTGGAAGGGTCACCATGAGGAAAACAGCCACCAAGCCCGTTTCTTCTGGAAGCCCATGGTATGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAGGCCCCCTCCTACCTCACTGGTGAATTCCCTGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACATTTGCCAAAAACCGTGAACTTGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCCCTAGGCTGTGTCTTCCCTGAGCTCTTGGCCCGCAATGGTGTCAAATTCGGTGAGGCTGTGTGGTTCAAGGCTGGGTCTCAAATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAAAGCATCCTTGCCATATGGGCCTGCCAGGTCATCTTGATGGGTGCAGTTGAAGGTTACCGTATTGCAGGAGGGCCTCTGGGTGAGGTGACAGACCCATTATACCCAGGTGGGAGCTTTGACCCATTGGGCCTGGCAGATGACCCAGAGGCATTTGCAGAGTTGAAGGTGAAAGAGATAAAGAATGGAAGGTTAGCAATGTTCTCAATGTTTGGATTCTTTGTTCAGGCCATTGTGACTGGGAAGGGACCTTTGGAGAACCTTGCTGACCATCTTGCTGACCCTGTCAACAACAATGCTTGGGCCTATGCCACCAACTTTGTCCCTGGAAAGTGA 795 0.527 MAASTMALSSPSFAGQAIKLAPSSQELGSGRVTMRKTATKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01106 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Rops5g01106 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Rops5g01106 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Rops5g01106 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Rops5g01106 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01106 Rops-Chr5 22690186 22691137 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01106 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 89.139 4.13e-175 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01106 K08912 - sind:105175684 523.472