Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01101 ATGGCTGCTTCAACAATGGCTCTCTCTTCTCCATCCTTTGCTGGGCAGGCAATCAAGCTTGCCCCTTCTTCCCAGGACATTGGCAGTGGAAGGGTCACCATGAGGAAAACAGCCACCAGGCCCGTTTCTTCTGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCAGGTGAGCCCCCATCCTACCTCACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCCGGGCTTTCTGCTGACCCAGAGACATTCGCCAAAAACCGTGAACTTGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCCCTAGGCTGTGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAATTCGGTGAAGCAGTGTGGTTCAAGGCTGGGTCCCAAATATTCAGTGAGGGTGGGCTTGACTACTTGGGTAACCCAAGCCTGATCCATGCACAAAGCATCCTTGCCATCTGGGCCTGCCAGGTCATTTTGATGGGTGCAGTTGAAGGTTACCGTATTGCCGGTGGGCCTCTGGGAGAGGTGACAGACCCACTATACCCAGGAGGGAGCTTTGACCCATTGGGCCTGGCAGATGACCCAGAGGCATTTGCAGAGTTGAAGGTGAAAGAGATAAAGAATGGAAGGTTAGCAATGTTCTCAATGTTTGGATTCTTTGTTCAGGCCATTGTGACTGGGAAGGGACCTTTGGAGAACCTTGCTGATCATCTTGCTGACCCTGTCAACAACAATGCTTGGGCCTATGCCACCAACTTTGTCCCTGGAAAGTGA 795 0.5321 MAASTMALSSPSFAGQAIKLAPSSQDIGSGRVTMRKTATRPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01101 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Rops5g01101 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Rops5g01101 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Rops5g01101 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Rops5g01101 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01101 Rops-Chr5 22628923 22629892 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01101 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 88.015 2.52e-173 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01101 K08912 - oeu:111402246 525.398