Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01083 ATGCTGGGGGACTCAGCTGTGTTGGGAACAGGAGGAGGAAGCTCTGGAGATGCAGTGGCAGCAGCTGCTGCTGCAGCATCATCGGCAGCAGGAGGAGGAGGTGGAGCTCATGACGGTGCTGACACGACGGCGGGTGGTGGTGGTGGATCAAATTCCGGTGATGATGAAAGAGGTAGAGGGGAAGAAAGTGACCGGAGCTTTGGTGGTAACAGGTGGCCAAGACAAGAGACTCTTGCTTTGTTGAAGATACGGTCTGATATGGGCGTGACTTTTAGAGATGCCAGTGTTAAGGGTCCCTTGTGGGAAGAAGTTTCCAGGAAGATGGCAGAGCTTGGCTATCACAGAAACCCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGAAGAAGTGGCAAATCAGATGGAAAAGCTTACCGTTTTTTTGATCAATTAGAAGCACTTGAGAACAACCTTTCAATTCAATCCCCAACACCTTCAAAACCATCACAAACAGCATTACCTGCTATACCAGTATCAATAGTGGTAACAACTTCATCATTGTCAATTCCAACCACAACAGCTACTACCACTACTACACCAACAGTGTCATTGCAACCATTGGCTAACACCACTCCAAGCACTGTTCCATCAACAACAACACTCCCCATAGCTATGCCTCAAGCTCATGGAATTCTCAACACCCCATCAATAAACCTCACAATCCCTTCACACCCATCATCAAACCCTACATATTTCCCACCATCAACAGCAAACCCTATCAGTAACCCTCCTCATACAGTTACCCCAATTTCCTTCCCCAACTTCCCAACCGATCTCTTCTCCAATTCTAGTTCTACCTCAACTTCCTCCGAGGAAACAACAACGTTGGAAGGGGGAAGGCGAAAACGGAAGAGAAAATGGAAGGACTTTTTTGAGAGGCTAATGAAGGAAGTGATGGAGAAGCAAGATGAGCTTCAGAAGAGATTCTTGGAAGCCATAGAGAAAAGAGAAAGGGAGAGAGTGGCTAGAGAAGAAGCATGGAGAATGCAAGAGATGCAAAGGATCAATAGAGAAAGGGAAATTCTTGCACAAGAGAGATCCATGGCTGCAGCAAAAGATGCAGCTGTTATGGCATTTTTGCAAAAGATAGCTGAACAACAAAATCTTGGTCCAGCATTGAACAACAACATTAATATTCCACAGCAACAACAATTGCCACAAGAAACCACACCAACACCAACACCAAAACCAACACCAGCAGTGCAACAAACAGCACCAGTTTCTCAGGTCCCACCATTGGCCCCACAACAACAACATCAGCATCATCAGGTGCAGCTGCAGCAACAGCAACAACAACAAGTGACCAATATGGAAATCATAAAAGGTGATAATGGTGAGAGTTTGATGCCACCATCCTCTTCAAGATGGCCAAAAGTGGAGGTTGAGACACTGATAAAGCTGAGAACTGACCTGGAAACAAAGTACCAAGAAACTGGACCAAAAGGGCCACTATGGGAGGAGATCTCAGCATTGATGAAGAAAATGGGGTATAATCGGAATGCCAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTACTTCAAGAAAGTGAAGGAAAGTAACAAGAAGAGACCAGAAGATTCCAAAACTTGTCCCTATTTTCACCAATTGGAAGCTCTATACAAGCAGAAGAACAAGCTAGATAACACGGTTAAGCCGGAGAGCACAATGATGGCGCCGTTAATGGTGCGGCCGGAGCAGCAATGGCCTCCACAGCAGGCGCCAGACGTCACCATGGAAGATGCTGAGAATAACCGGCGGCACCGCGATGAGGAAGAGTATGATGATGATGATGATGATGATAATGATGTTGATGACAAAGACCTTGTTGGTGATGATGATGAGGATGAAGATGATGAAGGAGGTGGGAACTATGAGATTGTGGCAAGCAAGCCAGCTTCAGTGGATGCATCTGCTGAGTGA 1992 0.4583 MLGDSAVLGTGGGSSGDAVAAAAAAASSAAGGGGGAHDGADTTAGGGGGSNSGDDERGRGEESDRSFGGNRWPRQETLALLKIRSDMGVTFRDASVKGPLWEEVSRKMAELGYHRNPKKCKEKFENVYKYHKRTKEGRSGKSDGKAYRFFDQLEALENNLSIQSPTPSKPSQTALPAIPVSIVVTTSSLSIPTTTATTTTTPTVSLQPLANTTPSTVPSTTTLPIAMPQAHGILNTPSINLTIPSHPSSNPTYFPPSTANPISNPPHTVTPISFPNFPTDLFSNSSSTSTSSEETTTLEGGRRKRKRKWKDFFERLMKEVMEKQDELQKRFLEAIEKRERERVAREEAWRMQEMQRINREREILAQERSMAAAKDAAVMAFLQKIAEQQNLGPALNNNINIPQQQQLPQETTPTPTPKPTPAVQQTAPVSQVPPLAPQQQHQHHQVQLQQQQQQQVTNMEIIKGDNGESLMPPSSSRWPKVEVETLIKLRTDLETKYQETGPKGPLWEEISALMKKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKQKNKLDNTVKPESTMMAPLMVRPEQQWPPQQAPDVTMEDAENNRRHRDEEEYDDDDDDDNDVDDKDLVGDDDEDEDDEGGGNYEIVASKPASVDASAE* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01083 663 PANTHER FI21293P1 26 611 - -
Rops5g01083 663 MobiDBLite consensus disorder prediction 423 442 - -
Rops5g01083 663 FunFam Trihelix transcription factor GT-2 478 539 - -
Rops5g01083 663 Coils Coil 310 337 - -
Rops5g01083 663 MobiDBLite consensus disorder prediction 281 305 - -
Rops5g01083 663 FunFam Trihelix transcription factor GT-2 72 133 - -
Rops5g01083 663 Gene3D - 478 539 - -
Rops5g01083 663 Gene3D - 72 133 - -
Rops5g01083 663 MobiDBLite consensus disorder prediction 616 646 - -
Rops5g01083 663 MobiDBLite consensus disorder prediction 407 442 - -
Rops5g01083 663 CDD GT1 70 135 - -
Rops5g01083 663 ProSiteProfiles Myb-like domain profile. 70 128 IPR001005 -
Rops5g01083 663 CDD GT1 476 541 - -
Rops5g01083 663 MobiDBLite consensus disorder prediction 587 663 - -
Rops5g01083 663 SMART sant 474 536 IPR001005 -
Rops5g01083 663 SMART sant 68 130 IPR001005 -
Rops5g01083 663 MobiDBLite consensus disorder prediction 54 69 - -
Rops5g01083 663 MobiDBLite consensus disorder prediction 281 296 - -
Rops5g01083 663 Pfam Myb/SANT-like DNA-binding domain 476 563 IPR044822 -
Rops5g01083 663 Pfam Myb/SANT-like DNA-binding domain 70 156 IPR044822 -
Rops5g01083 663 ProSiteProfiles Myb-like domain profile. 476 534 IPR001005 -
Rops5g01083 663 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01083 Rops-Chr5 22306544 22309986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01083 68 591 Trihelix Transcription Factor Family AT1G76890 47.037 1.48e-143 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops5g01083 Myb_DNA-bind_4 9.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01083 - - gmx:100804788 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01083 5 22306544 22309986 Rops6g02599 6 46704076 46707754 PCT