Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01082 ATGCAGCTGGGATACTCAAGTGAGATCTCCTCTCCAAACAAACCTGTGATGGCGGTGACGGTGGCGCCGCCGCCGGAAGCAGTGGCACATGAAGGTGTCAACGGTGGAGACATGGACATAGAAGCAAATTCAAGTGAAGAGAAGATTAAGGAAGGAAGTGATAATAAGATCAGTTTTGGAGGAAACAGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCAGATATGGATGCAGTGTTTCGTGATTCAAGTCTTAAAGGTCCACTTTGGGATGAAGTTTCAAGGAAACTAGCAGAGCTTGGATATCACCGAAGTGCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAATACAACAAGAGAACCAAAGAAAGTAGAAGTGGTAAATCACAAGGAAAAACCTATAGGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAATCTCATACCCGCCAAAATCACAACCTGATTCCGCAACAATAAACACAACTACATTACCAACAAGACCAAGTGAAGGTACAACCATCTCTTATGTTACCACTTTTCCATCCACAAACCCTACACTTATTTCTCCTTCACCACCAACCAATGCTACCTTCACAACATCCACAGCCATAACCAACCCTAGAAATCAACCATCACAAGCCAACAATAATGTCCCACATTCTTCGCCCAACATGAACCTTTTCTCAACCACCTCCACCTCTTCTTCCACCGCATCAGATGAAGACTTAGAAGAGAGGTACAGGAAGAAGAGAAAATGGAAGGACTACTTTAGAAGGCTCACTAGGAAGGTTCTATCCAAGCAAAAGGAAATGCAGGAGAAGTTCTTGGAAGCCATTGACAAACGTGAGAGGGAATGGATGGCACAACAAGACTCTAGGAGGATGCAAGAAATGGAGAGGATTAATAAGGAACATGAGATTCTTGTTCAAGAAAGATCAACAGCAGCAGCCAAAGATGCAGCTGTTACTGCTATGTTGCAAAAGTTGTGTGGGCAGCAAAATCCCACACAAACTGAACGTGGAAATTTCCTCCAACAACAACCACCTCCCCACCCATTATCACAGGTAGAGCCACAACAACAGCAGCAACTGCCACAACCACCACCACCACCATTGGTGTCAAACAACAATTTTGAAATCCAGAGAACAAACAATGGTGGTAGTTCTTCTAGGTGGCCAAAGGCTGAAGTTCATGCACTAATAAGACTGAGGACAAGTCTTGAAGCGAAGTTTAATGAAAATGGACCAAAAGCTCCACTATGGGAAGAACTATCAGCTGGAATGCAGAGGCTTGGCTATAACAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTTAAGAAAATGAAGGAAAGTAACAGACAAAAGAGTGAGGATAGCAAGACATGTCCTTATTTTCATGAGCTTGATGCTTTATACAAAGAAAAGAGCAAAACACAGAACCCATTTGGCATATCATTCCAGAATATGAAACCAAATGAGATGATGGAGCCTTTGATGGTGCAACCAGAACAGCAATGGAGGCCTCCACCTGAAGAGGGTATAACGAGGGAAACTGAAAATCAGTATGAAGAGAAAGAAGAAGAAAATGTAGAAGAAGAAGATGATGATGATGGTGTTGAAGATGGAGATAGTGATGAAGATGAGGGAGCTGGCCGTTATGAGATTGAGACAAATAAACCTTCTTCAGTGGACACCGTTGAATGA 1746 0.4273 MQLGYSSEISSPNKPVMAVTVAPPPEAVAHEGVNGGDMDIEANSSEEKIKEGSDNKISFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYNKRTKESRSGKSQGKTYRFFDQLQALENQFTISYPPKSQPDSATINTTTLPTRPSEGTTISYVTTFPSTNPTLISPSPPTNATFTTSTAITNPRNQPSQANNNVPHSSPNMNLFSTTSTSSSTASDEDLEERYRKKRKWKDYFRRLTRKVLSKQKEMQEKFLEAIDKREREWMAQQDSRRMQEMERINKEHEILVQERSTAAAKDAAVTAMLQKLCGQQNPTQTERGNFLQQQPPPHPLSQVEPQQQQQLPQPPPPPLVSNNNFEIQRTNNGGSSSRWPKAEVHALIRLRTSLEAKFNENGPKAPLWEELSAGMQRLGYNRSAKRCKEKWENINKYFKKMKESNRQKSEDSKTCPYFHELDALYKEKSKTQNPFGISFQNMKPNEMMEPLMVQPEQQWRPPPEEGITRETENQYEEKEEENVEEEDDDDGVEDGDSDEDEGAGRYEIETNKPSSVDTVE* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01082 581 CDD GT1 398 463 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 383 399 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 155 179 - -
Rops5g01082 581 FunFam Trihelix transcription factor GT-2 400 461 - -
Rops5g01082 581 PANTHER FI21293P1 35 541 - -
Rops5g01082 581 Coils Coil 529 549 - -
Rops5g01082 581 Gene3D - 64 125 - -
Rops5g01082 581 Gene3D - 400 461 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 191 251 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 342 369 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 342 401 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 515 581 - -
Rops5g01082 581 CDD GT1 62 127 - -
Rops5g01082 581 ProSiteProfiles Myb-like domain profile. 62 120 IPR001005 -
Rops5g01082 581 Pfam Myb/SANT-like DNA-binding domain 398 485 IPR044822 -
Rops5g01082 581 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Rops5g01082 581 ProSiteProfiles Myb-like domain profile. 392 456 IPR001005 -
Rops5g01082 581 MobiDBLite consensus disorder prediction 191 246 - -
Rops5g01082 581 MobiDBLite consensus disorder prediction 538 564 - -
Rops5g01082 581 SMART sant 60 122 IPR001005 -
Rops5g01082 581 SMART sant 396 458 IPR001005 -
Rops5g01082 581 FunFam Trihelix transcription factor GT-2 64 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01082 Rops-Chr5 22224476 22241514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01082 58 520 Trihelix Transcription Factor Family AT1G76880 47.835 5.55e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops5g01082 Myb_DNA-bind_4 1.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01082 - - gmx:100776819 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01082 5 22224476 22241514 Rops5g01082 5 22224476 22241514 ECH
Rops5g01082 5 22224476 22241514 Rops6g02600 6 46740398 46743665 PCT