Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g01082 | ATGCAGCTGGGATACTCAAGTGAGATCTCCTCTCCAAACAAACCTGTGATGGCGGTGACGGTGGCGCCGCCGCCGGAAGCAGTGGCACATGAAGGTGTCAACGGTGGAGACATGGACATAGAAGCAAATTCAAGTGAAGAGAAGATTAAGGAAGGAAGTGATAATAAGATCAGTTTTGGAGGAAACAGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCAGATATGGATGCAGTGTTTCGTGATTCAAGTCTTAAAGGTCCACTTTGGGATGAAGTTTCAAGGAAACTAGCAGAGCTTGGATATCACCGAAGTGCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAATACAACAAGAGAACCAAAGAAAGTAGAAGTGGTAAATCACAAGGAAAAACCTATAGGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAATCTCATACCCGCCAAAATCACAACCTGATTCCGCAACAATAAACACAACTACATTACCAACAAGACCAAGTGAAGGTACAACCATCTCTTATGTTACCACTTTTCCATCCACAAACCCTACACTTATTTCTCCTTCACCACCAACCAATGCTACCTTCACAACATCCACAGCCATAACCAACCCTAGAAATCAACCATCACAAGCCAACAATAATGTCCCACATTCTTCGCCCAACATGAACCTTTTCTCAACCACCTCCACCTCTTCTTCCACCGCATCAGATGAAGACTTAGAAGAGAGGTACAGGAAGAAGAGAAAATGGAAGGACTACTTTAGAAGGCTCACTAGGAAGGTTCTATCCAAGCAAAAGGAAATGCAGGAGAAGTTCTTGGAAGCCATTGACAAACGTGAGAGGGAATGGATGGCACAACAAGACTCTAGGAGGATGCAAGAAATGGAGAGGATTAATAAGGAACATGAGATTCTTGTTCAAGAAAGATCAACAGCAGCAGCCAAAGATGCAGCTGTTACTGCTATGTTGCAAAAGTTGTGTGGGCAGCAAAATCCCACACAAACTGAACGTGGAAATTTCCTCCAACAACAACCACCTCCCCACCCATTATCACAGGTAGAGCCACAACAACAGCAGCAACTGCCACAACCACCACCACCACCATTGGTGTCAAACAACAATTTTGAAATCCAGAGAACAAACAATGGTGGTAGTTCTTCTAGGTGGCCAAAGGCTGAAGTTCATGCACTAATAAGACTGAGGACAAGTCTTGAAGCGAAGTTTAATGAAAATGGACCAAAAGCTCCACTATGGGAAGAACTATCAGCTGGAATGCAGAGGCTTGGCTATAACAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTTAAGAAAATGAAGGAAAGTAACAGACAAAAGAGTGAGGATAGCAAGACATGTCCTTATTTTCATGAGCTTGATGCTTTATACAAAGAAAAGAGCAAAACACAGAACCCATTTGGCATATCATTCCAGAATATGAAACCAAATGAGATGATGGAGCCTTTGATGGTGCAACCAGAACAGCAATGGAGGCCTCCACCTGAAGAGGGTATAACGAGGGAAACTGAAAATCAGTATGAAGAGAAAGAAGAAGAAAATGTAGAAGAAGAAGATGATGATGATGGTGTTGAAGATGGAGATAGTGATGAAGATGAGGGAGCTGGCCGTTATGAGATTGAGACAAATAAACCTTCTTCAGTGGACACCGTTGAATGA | 1746 | 0.4273 | MQLGYSSEISSPNKPVMAVTVAPPPEAVAHEGVNGGDMDIEANSSEEKIKEGSDNKISFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYNKRTKESRSGKSQGKTYRFFDQLQALENQFTISYPPKSQPDSATINTTTLPTRPSEGTTISYVTTFPSTNPTLISPSPPTNATFTTSTAITNPRNQPSQANNNVPHSSPNMNLFSTTSTSSSTASDEDLEERYRKKRKWKDYFRRLTRKVLSKQKEMQEKFLEAIDKREREWMAQQDSRRMQEMERINKEHEILVQERSTAAAKDAAVTAMLQKLCGQQNPTQTERGNFLQQQPPPHPLSQVEPQQQQQLPQPPPPPLVSNNNFEIQRTNNGGSSSRWPKAEVHALIRLRTSLEAKFNENGPKAPLWEELSAGMQRLGYNRSAKRCKEKWENINKYFKKMKESNRQKSEDSKTCPYFHELDALYKEKSKTQNPFGISFQNMKPNEMMEPLMVQPEQQWRPPPEEGITRETENQYEEKEEENVEEEDDDDGVEDGDSDEDEGAGRYEIETNKPSSVDTVE* | 582 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g01082 | 581 | CDD | GT1 | 398 | 463 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 383 | 399 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 155 | 179 | - | - | |
Rops5g01082 | 581 | FunFam | Trihelix transcription factor GT-2 | 400 | 461 | - | - | |
Rops5g01082 | 581 | PANTHER | FI21293P1 | 35 | 541 | - | - | |
Rops5g01082 | 581 | Coils | Coil | 529 | 549 | - | - | |
Rops5g01082 | 581 | Gene3D | - | 64 | 125 | - | - | |
Rops5g01082 | 581 | Gene3D | - | 400 | 461 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 191 | 251 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 342 | 369 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 342 | 401 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 515 | 581 | - | - | |
Rops5g01082 | 581 | CDD | GT1 | 62 | 127 | - | - | |
Rops5g01082 | 581 | ProSiteProfiles | Myb-like domain profile. | 62 | 120 | IPR001005 | - | |
Rops5g01082 | 581 | Pfam | Myb/SANT-like DNA-binding domain | 398 | 485 | IPR044822 | - | |
Rops5g01082 | 581 | Pfam | Myb/SANT-like DNA-binding domain | 62 | 148 | IPR044822 | - | |
Rops5g01082 | 581 | ProSiteProfiles | Myb-like domain profile. | 392 | 456 | IPR001005 | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 191 | 246 | - | - | |
Rops5g01082 | 581 | MobiDBLite | consensus disorder prediction | 538 | 564 | - | - | |
Rops5g01082 | 581 | SMART | sant | 60 | 122 | IPR001005 | - | |
Rops5g01082 | 581 | SMART | sant | 396 | 458 | IPR001005 | - | |
Rops5g01082 | 581 | FunFam | Trihelix transcription factor GT-2 | 64 | 125 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g01082 | Rops-Chr5 | 22224476 | 22241514 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops5g01082 | 58 | 520 | Trihelix Transcription Factor Family | AT1G76880 | 47.835 | 5.55e-134 | 402 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Trihelix | Rops5g01082 | Myb_DNA-bind_4 | 1.1e-21 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g01082 | - | - | gmx:100776819 | 674.855 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops5g01082 | 5 | 22224476 | 22241514 | Rops5g01082 | 5 | 22224476 | 22241514 | ECH | |
Rops5g01082 | 5 | 22224476 | 22241514 | Rops6g02600 | 6 | 46740398 | 46743665 | PCT |