Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01081 ATGGTGCAGCCCCTACATTCTTCCTACACAAGCTCTCACTTGCCCCTGCAACTCGTTGATACCAAGAGGTGGTGTAAGGGTGCCCAAGTTCTCCCTCACCATCAATGGTTGGACGTGAGAAATGGTTGGGATTGTCTTCATGAGCTTCTCTTATGCTACCTTGCTCTCAATCCCACACATACCCACAAGCATATTGTTCGTGCTTTCACACACCTTGTTGTGGACCTTTGCTCACAAGCTGAAGACTTAAACATAGCTCTCTTTGCTGCCAGGGTTGGTGCATCGATTAGAAGTGGCTCCCTAGCCATCATAGCATCCATTTCAAACTTGTTTTTGACCTCTTATTGGGTTTCGTCCTTTACTGAAGATACTATGAATGGGAAGTCAACAACTGTGGCACTCCCTCAAAACCGGGCAGCTACTTCTGGGTGA 432 0.4722 MVQPLHSSYTSSHLPLQLVDTKRWCKGAQVLPHHQWLDVRNGWDCLHELLLCYLALNPTHTHKHIVRAFTHLVVDLCSQAEDLNIALFAARVGASIRSGSLAIIASISNLFLTSYWVSSFTEDTMNGKSTTVALPQNRAATSG* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01081 143 ProSiteProfiles OVATE domain profile. 8 75 IPR006458 -
Rops5g01081 143 Pfam Transcriptional repressor, ovate 41 76 IPR006458 -
Rops5g01081 143 NCBIfam uncharacterized plant-specific domain TIGR01568 38 77 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01081 Rops-Chr5 22177582 22178013 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Rops5g01081 Ovate 6.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01081 - - lja:Lj1g3v0095190.1 74.3294