Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01079 ATGGTGGGGGTGATATCTCTTCTTTGGAATTTGAAGCATCTAAGTGAAACAACCATTGAAGAGTTCCATTTTGAAAAATTTTCTCAACAAATTTTCTTTATTTTGGGTGTACTCACGCTTCAGCTCCTAAAAAAAAGAAATACCATGTCTTGCGAGGAAGATTGCAATGAAGATAATGTTCAAGAAAGTTCAGCCCCTAGTAGTCTCAAAAGAGTTAAAACATCCATGGCTTGGGATTATTTTGAGAAGTTTGTTGATGATAAAGGGCTTCCAAAGGCGAAGTGTAAAAATTGTGGCGAAGTCTACATGTCAAGAGATGGTAGTGGAACTTCAAATATGAGACGCCATGTGAAGATATGTGGTGTAGAAGGGGAAGTATCTTCTTATTTGCCTCTTGATCAAGAAAAATTTCGAGAGAAGATATCTGAGGTAATAATCAAACATGGCTATCCCTTTTCTTTTGTGGAACATGAAGGAATTAAGGATTTACATTGTTTCTTAAACCCACATGCAAAAACAATATCTAGAAACACTGCTAAGTCTGATGTGCTAAAGCTGTATAGGAAAGAAAAAGAAAATTTGAAATGCTACTTGCGGTCTGTTCCTGGAAGAATTTGTTTGACTTCTGATCTTTGGTCATCAATCACTACTAATCAGTATATGGTGCTCACTGCCCACTATGTTTCTAAGAATTGGGAATTACAAAAGAAAGTGTTATCTTTCTTTCGTATTCCACCACCTCATAGTGGTGCTAATTTAGCTGAAAAATTGTTGAGCTTGTTAAGGGAGTGGGATATAGAAAAAAAAATATTTACCATTACTTTGGATAATGTGTCTTACAATGACACAATGGTAAGTATATTGAAGAAACATTCATCATTTGGATCAGGATTAATTGCTAATGGAGAGTATTTTCATATAAGGTGTGGGGCTCATATTTTAAATTTAATTGTCCAAGAAGGTTTAAAAGTGATAGATAGTGCATTAGTTAAAATTCGAGAGAGTGTGAAGTACATTAGGGGTTCAGATGCACGAAAATTAAAGTTTGCATCATGTTTAGAACAACTCTCTTATGTAACATCTAAGCAAATTCGTCAAGATGTACCCACAAGATGGAATTCCACATACCTTATGCTTGAAAGCGCTATAGGTTTTCGAGAGGCCTTTTCACTCCTTAATGATGTTGATCCCCATTTTGATAGTTTTTTATCAGAAGAGGAATGGGTTGAGGTAGAAAAAATAGTAGAGTTTTTGAAGCCATTTTATGACATCACCACTCTCTTCTCAGGCAGCTCTTATCCTACTGCTAACCTGTATTTTTATGGTGTGTGGAGGATTAATCTTAAAATCAAGGAAGCAGCTTGTTTTTCTCATGAGGAGTTTGAACATGAGAACCAAATTTGTTGTATGGCTAGAAGAATGAAGAGGAAGTTTGACAAGTATTGGGACTCTTACAGTGTAATTCTTTCATTTGCAGTTATTTTAGATCCTAGATATAAGTTGCAATTTGTGGAGTATTGTTATGTGAAATTGTATGGAGATGATTATGGTTTGAAATTGGTAGAGGAAATTCACAATAAGCTGAAAGATTTTTTCCAAGAATATCTTAATTCCTCTTTGAAAGATACACATCCTCCGAGTTCACAAAGATCTGTTAGAGGTAGTCCAAATATCACCTCTTTAAATTATCTGGAGGATTTTGGAATATTTCAGAGTAGATTGTGTGGATCATCAAGGAAGGAATCTGATTTGCAATCATATTTGCATGAAGATAAACTTGATCACAAGCAATATGTAAACTTGGATGTTTTGGAGTATTGGAAATCAAATGAAGGTAAATATCCCGAGCTTTCTTTAATGGCACGAGATGTGTTAAGTATACCAATTACTACAGTTGCATCAGAATCTGCATTTAGCATTGGTGGACGTATACTTAACAAGTATCGAAGTTCTCTTTTGCCTGAAAATGTTGAAGCTCTATTATGTACAAATGATTGGCTTTGTGGAACTCCAGCTGCATTGGATCTTGATGATGAAGAACTAGTGGAGGATTTTACAGCTTTATCTTCGTCGGAAATCACGGTAAAGCCGAAGCCGGTGGAAAATATCACCCCTGAGTTCACGGCGGTGTCTCCGGTGGTCCTGCAGAAATCGAAGGCTGCTCCGGTTAAGGGGAAGCACTACTGTGGCGTGAGGCAACGACCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACTCGACGAAGAACGGTGCTAGGCTTTGGCTCGGAACATTCGAGACCGCTGAGGATGCCGCGTTGGCTTATGATAGAGCCGCGTATAGGATGAGAGGATATAGAGCGTTGCTGAATTTTCCACTTCTGGTAAACTCTGATGAACCCGACCCGGTTCGGGTTACTTTGAAGCAGTCATCGTAG 2415 0.3797 MVGVISLLWNLKHLSETTIEEFHFEKFSQQIFFILGVLTLQLLKKRNTMSCEEDCNEDNVQESSAPSSLKRVKTSMAWDYFEKFVDDKGLPKAKCKNCGEVYMSRDGSGTSNMRRHVKICGVEGEVSSYLPLDQEKFREKISEVIIKHGYPFSFVEHEGIKDLHCFLNPHAKTISRNTAKSDVLKLYRKEKENLKCYLRSVPGRICLTSDLWSSITTNQYMVLTAHYVSKNWELQKKVLSFFRIPPPHSGANLAEKLLSLLREWDIEKKIFTITLDNVSYNDTMVSILKKHSSFGSGLIANGEYFHIRCGAHILNLIVQEGLKVIDSALVKIRESVKYIRGSDARKLKFASCLEQLSYVTSKQIRQDVPTRWNSTYLMLESAIGFREAFSLLNDVDPHFDSFLSEEEWVEVEKIVEFLKPFYDITTLFSGSSYPTANLYFYGVWRINLKIKEAACFSHEEFEHENQICCMARRMKRKFDKYWDSYSVILSFAVILDPRYKLQFVEYCYVKLYGDDYGLKLVEEIHNKLKDFFQEYLNSSLKDTHPPSSQRSVRGSPNITSLNYLEDFGIFQSRLCGSSRKESDLQSYLHEDKLDHKQYVNLDVLEYWKSNEGKYPELSLMARDVLSIPITTVASESAFSIGGRILNKYRSSLLPENVEALLCTNDWLCGTPAALDLDDEELVEDFTALSSSEITVKPKPVENITPEFTAVSPVVLQKSKAAPVKGKHYCGVRQRPWGKFAAEIRDSTKNGARLWLGTFETAEDAALAYDRAAYRMRGYRALLNFPLLVNSDEPDPVRVTLKQSS* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01079 804 ProSiteProfiles Zinc finger BED-type profile. 72 118 IPR003656 GO:0003677
Rops5g01079 804 SMART bed5 72 123 - -
Rops5g01079 804 FunFam Ethylene-responsive transcription factor 2 726 786 - -
Rops5g01079 804 SMART rav1_2 727 791 IPR001471 GO:0003700|GO:0006355
Rops5g01079 804 PANTHER BED FINGER-RELATED 182 677 IPR045259 -
Rops5g01079 804 SUPERFAMILY DNA-binding domain 727 786 IPR016177 GO:0003677
Rops5g01079 804 CDD AP2 726 785 IPR001471 GO:0003700|GO:0006355
Rops5g01079 804 Pfam BED zinc finger 76 117 IPR003656 GO:0003677
Rops5g01079 804 SUPERFAMILY beta-beta-alpha zinc fingers 75 120 IPR036236 -
Rops5g01079 804 Gene3D AP2/ERF domain 726 787 IPR036955 GO:0003700|GO:0006355
Rops5g01079 804 PRINTS Ethylene responsive element binding protein signature 751 767 IPR001471 GO:0003700|GO:0006355
Rops5g01079 804 PRINTS Ethylene responsive element binding protein signature 728 739 IPR001471 GO:0003700|GO:0006355
Rops5g01079 804 Pfam AP2 domain 727 777 IPR001471 GO:0003700|GO:0006355
Rops5g01079 804 SUPERFAMILY Ribonuclease H-like 202 667 IPR012337 -
Rops5g01079 804 Pfam hAT family C-terminal dimerisation region 583 667 IPR008906 GO:0046983
Rops5g01079 804 ProSiteProfiles AP2/ERF domain profile. 727 785 IPR001471 GO:0003700|GO:0006355
Rops5g01079 804 Pfam Domain of unknown function (DUF4413) 429 535 IPR025525 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01079 Rops-Chr5 22102947 22117595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01079 704 798 AP2-EREBP Transcription Factor Family AT4G17500 74.757 3.51e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g01079 DUF4413 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01079 - - psat:127085456 761.525