Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01077 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGCCATCACAGGGGCCAGTCAAATAGTTCAGTCCATGAGTTGAAAGAACAGCTGCCAGTAACACTGAACAGCCAGTGGGCTAGACTTCCACCTGAGCTTCTTTATGATGTTATTAAAAGATTGGAAGCGAGTGAGAGTACATGGCCTGCTTTTAAGCATGTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTCAGTGGAAAGATTACTTTCCCCATCTCCCTGAAGCAGCCTGGTTTTAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTTACTTACCGCCTATTCCTTTGTCTTAGTCCTGCCTTGGTTGTTGAAAATGGAAAGTTTCTCCTTTCTGCCAAACGGACCAGAAGAACAACTTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCAAGGTCTAGTAGCACTTACATTGGAAAACTAAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCACCCTATAACAATGCTCAGCTGTCTCCTCCAGGCCGGAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCCAAAGTCCCTAGTGGCACCTACAACATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCACGCAGGATGAACTGTGCCATGTACTCAATCCCTACATCAGCCCTTGAACCAGGTGGCAGTGTCCCAGGCCAGCCAGAACTCCTTCCCCGCACCCTTGAGGATTCCTTCCGGAGCATATCCTTCTCAAGATCAATCAACAACTCAACCGAGTTTAGCAGCGCTAGGTTCTCGGACATAATGGGGACTGGCAATGAAGAGGAGGGAAAGGACAGACCTCTAGTTCTCAAGAACAAACAACCTAGATGGCATGAGCAACTGCAATGTTGGTGTCTCAACTTCAGGGGAAGGGTGACTGTTGCCTCTGTCAAGAATTTTCAGCTAATTGCTGCAACACCACCGGCAGCTGGTGCTCCTACACCATCTCAGCCGACACAGTCCGATCACGATAAGGTTATTCTTCAGTTTGGCAAAGTCGGCAGGGATATGTTTACTATGGACTATAGATATCCCCTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACAAGCTTTGACACAAAACTGGCATGTGAATAG 1272 0.4607 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGQSNSSVHELKEQLPVTLNSQWARLPPELLYDVIKRLEASESTWPAFKHVVACAAVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGPIQCFIKRDKSNLTYRLFLCLSPALVVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGTYNIAQITYELNVLGTRGPRRMNCAMYSIPTSALEPGGSVPGQPELLPRTLEDSFRSISFSRSINNSTEFSSARFSDIMGTGNEEEGKDRPLVLKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPAAGAPTPSQPTQSDHDKVILQFGKVGRDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01077 423 Gene3D Tubby Protein; Chain A 111 423 IPR025659 -
Rops5g01077 423 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Rops5g01077 423 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Rops5g01077 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Rops5g01077 423 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Rops5g01077 423 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Rops5g01077 423 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Rops5g01077 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Rops5g01077 423 Gene3D - 48 101 - -
Rops5g01077 423 Pfam Tub family 114 418 IPR000007 -
Rops5g01077 423 SUPERFAMILY Tubby C-terminal domain-like 102 423 IPR025659 -
Rops5g01077 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Rops5g01077 423 PANTHER TUBBY-RELATED 30 421 - -
Rops5g01077 423 CDD F-box_AtTLP-like 53 97 - -
Rops5g01077 423 SUPERFAMILY F-box domain 52 97 IPR036047 GO:0005515
Rops5g01077 423 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Rops5g01077 423 FunFam Tubby-like F-box protein 110 423 - -
Rops5g01077 423 Pfam F-box domain 53 100 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01077 Rops-Chr5 22079682 22084627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01077 1 423 TUB Transcription Factor Family AT1G76900 68.192 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops5g01077 Tub 5.3e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01077 K19600 - rcu:8283226 745.732