Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01076 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGCCATCACAGGGGCCAGTCAAATAGTTCAGTCCATGAGTTGAAAGAACAGCTGCCGGTAACACAGAACAGCCAGTGGGCTAGACTTGCACCCGAGCTTCTTTATGATGCTATTAAAAGATTGGAAGCAAGTGAGAGTACATGGCCTGCTTGTAAGCATGTGGTTGCCTGTGCTGCTGTGTGCAAATCTTGGAGAGAAATGTGCAAACAAATTGTTAGCAGTCCTGAGTTCAGTGGGAAGATTAGGCCTGGTCTTAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTATCACCTATTCCTTTGTCTTAGTCCTGTGCTTGTTAAAAATGGAAAGTTTCTACTTTCTGCCAAACGGACCAGAAGAACAACTTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCAAGGTCTAGTAGCACTTACATTGGAAAATTAAGATATCTTTCAATGGTCTGGTATTCTATATCCATTGATGTCTCTGCATGA 594 0.4276 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGQSNSSVHELKEQLPVTQNSQWARLAPELLYDAIKRLEASESTWPACKHVVACAAVCKSWREMCKQIVSSPEFSGKIRPGLRDGPIQCFIKRDKSNLTYHLFLCLSPVLVKNGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRYLSMVWYSISIDVSA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01076 197 PANTHER TUBBY-RELATED 30 185 - -
Rops5g01076 197 Gene3D Tubby Protein; Chain A 103 187 IPR025659 -
Rops5g01076 197 Pfam F-box domain 53 99 IPR001810 GO:0005515
Rops5g01076 197 SUPERFAMILY Tubby C-terminal domain-like 108 182 IPR025659 -
Rops5g01076 197 Pfam Tub family 109 182 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01076 Rops-Chr5 22072017 22075845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01076 1 182 TUB Transcription Factor Family AT1G76900 68.041 2.12e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops5g01076 Tub 5.2e-26 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01076 K19600 - gmx:100817532 308.916