Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01056 ATGGCACATGAGGATTGGGATCTCTTTGCCATAGTTAGAAGCTGCAAAGCTGCTACCTTTACTGCTTCTACTACCTCTACAGAAACTCCACCCATCAACACCAATAGTAGATCCCCTCAAGACACTACTACAACGCCTTGCTTGGCTCCCTTTAATGTTAGCCAAGAAAATGGCTCATTCTCTTTTCCCAATATTGTGCAACCTAGAACCAATGAGTTCCAAGAGCTACACCAATTGCTAATGAACTTCAACCCCACCACCACCACTGCCAGCACTAGCACTAGTGGTTGTGGCATCAATCCCAATTCCACTTTTTCTGACCTCACAGGATTCATTGGACAACAACAGCAGATGCAGCAAGGCCTCCACAACCCTATGCCTACTCCCACAACTTGCACCTCCATTGGAGCATCCACTACAGGTTTTGACAGATTCCATCACCAACAACAGCAACAACAAACCCCAGAACAGCAACAACAACAACACAATCAACTACCAGTTCAAGTACCCCAAACAAGTTCTATGGTTTTACCAAATACACAACCACAAACACCCAGATCAAGAAAAAGAAAAGGCCAACAGAAGAAAATGGTGTGCCATGTGACTGCAGATAACCTCTCCGCAGATTTATGGGCATGGCGAAAATATGGACAAAAACCCATAAAAGGTTCTCCATATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGATGTGCAGCTAGAAAGCAAGTAGAGAGAAGCACAACGGAACCAAACATGTTCATAGTGACATACACCGGAGAACACAAGCACCCGAAACCCGTTCACCGGAACTCCCTCGCCGGCAGTACCCGGAACAAGCCATCGGCGACCCGTTTACCCGAAGCCCGACAAATTGAGTCACCCTCCAACGCGGGGGGCGTGAGTTCGTCAAGCTCGTTGTTGAGGTCAGATCCGCCGGAGAACAACGACGCCCAGGTCACCGCCGGAGAACCCGAAGGCCATGACCCGGAAAATGAACCTGATGAAGCCTCTGACGATGGCGACGACGTTTTGATACCCAACACGGCTGCTTTGTCAGACGTCTTCGAATTGGGATTGCACCACTTTGACGGTGGCACCAAGCCATCCGGTGGGTCAGATCCGAATAGCGTTTCCGGGTCGATTCGACCCAGTGCTGAACCGTCCTTTGATAATAATCGACTCAATCCCGGTTGA 1200 0.49 MAHEDWDLFAIVRSCKAATFTASTTSTETPPINTNSRSPQDTTTTPCLAPFNVSQENGSFSFPNIVQPRTNEFQELHQLLMNFNPTTTTASTSTSGCGINPNSTFSDLTGFIGQQQQMQQGLHNPMPTPTTCTSIGASTTGFDRFHHQQQQQQTPEQQQQQHNQLPVQVPQTSSMVLPNTQPQTPRSRKRKGQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNMFIVTYTGEHKHPKPVHRNSLAGSTRNKPSATRLPEARQIESPSNAGGVSSSSSLLRSDPPENNDAQVTAGEPEGHDPENEPDEASDDGDDVLIPNTAALSDVFELGLHHFDGGTKPSGGSDPNSVSGSIRPSAEPSFDNNRLNPG* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01056 399 MobiDBLite consensus disorder prediction 273 318 - -
Rops5g01056 399 Gene3D WRKY domain 191 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops5g01056 399 MobiDBLite consensus disorder prediction 371 399 - -
Rops5g01056 399 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 337 IPR044810 GO:0003700
Rops5g01056 399 MobiDBLite consensus disorder prediction 22 43 - -
Rops5g01056 399 MobiDBLite consensus disorder prediction 145 198 - -
Rops5g01056 399 FunFam WRKY transcription factor 22 190 261 - -
Rops5g01056 399 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops5g01056 399 SMART WRKY_cls 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops5g01056 399 SUPERFAMILY WRKY DNA-binding domain 203 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops5g01056 399 MobiDBLite consensus disorder prediction 258 399 - -
Rops5g01056 399 MobiDBLite consensus disorder prediction 145 187 - -
Rops5g01056 399 Pfam WRKY DNA -binding domain 209 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01056 Rops-Chr5 21546642 21548379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01056 75 378 WRKY Transcription Factor Family AT4G01250 38.585 1.63e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops5g01056 WRKY 5.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01056 - - aprc:113866622 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01056 5 21546642 21548379 Rops6g02676 6 48144927 48146228 ECH
Rops4g01545 4 38553180 38554666 Rops5g01056 5 21546642 21548379 ECH
Rops8g01021 8 21503416 21505023 Rops5g01056 5 21546642 21548379 ECH
Rops4g02108 4 47511521 47516886 Rops5g01056 5 21546642 21548379 ECH
Rops5g01056 5 21546642 21548379 Rops5g01056 5 21546642 21548379 ECH
Rops5g01056 5 21546642 21548379 Rops6g02676 6 48144927 48146228 PCT