Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01025 ATGGAACAGAAGCACGTTTTTTTGTCAGCATTAAGTGTTGGAGTTGGGTTGGGTGTGGGGCTTGGATTGAGTTCAGGACAGAAATGGGTTGGAGGGAATCGTGACTCTGATGAGGTTTCTGGTGAGCAAATTGTGGAAGAGCTCAAGAGATTGATGATTGATGGAAAGGATATCAAAGTTACATTTGATGACTTTCCTTATTACTTAAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTTGACTTTTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTGTGGTCCAGCAGAACTTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTCCTTTGAATCAAAGTTGCTATTGTTAGATATTACTGACTTCTCTGTGAAGTTGCAGAGCAGATTTGGATGTTCCAGAAAAGAACCTTCTTTTAAAAGGTCAATATCCGAGATGACATTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATGCTGCCTTCAACAGGCGAAACTAAAGGAACTCTGCGTCGACAAAGCAGTGCTGTTGAAAGTTTCAATAATCCTCCAAAGCTTCGGAGGAATGCCTCTGCTGCGTCTGATATAAGTAGCACTGCTTCACAGAGTGGTCCAACAAATCCAGCTCCTTTAAGGCGCACAAGTAGCTTGTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTATACAAGGTTTTGGTTTCAATATCAGAAACCAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTTGTTCTCCAATCACCAAGGTTATATAATTTATTACAAAAAATGATAAAGAAACTGTCAGGCTCGGTGTTGATACTCGGTTCGCAGATATTAGATTCAGAAGATGATAGCAAAGAAGTTGATGAAAGGCTCACTGTGTTATTCCCCTACAACATTGAGATCAAACCTCCTGAAGATGAAACTCATCTTGGGAGCTGGAAAGGCCAACTGGAAAAGGACATGAAAATGATTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGAAGACTTATCTTCAATCTGCCATGCAGATACTATGATACTCAGTAATTATATTGAAGAAATCGTGGTATCTGCAATATCTTACCATTTAATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAACGAATCTAACAAGGAAAATGCTGGAGAAGATATTATTGGTGCAAAGAATGATGTTAGGTGTGACAACCAAGCACCTGACAACAAAAGTGAGACAGAGAAATCCATCCCTGTAACAAAGAAAGATGGGGAAACTCCTACACCTGCAAAAGCAGAAGTTCCTGACAACGAGTTTGAGAAGCGTATAAGACCAGAGGTCATCCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGTTGGTAATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCTTGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGAAAAACAATGCTAGCAAAGGCAATTGCAAATGATGCTGGAGCAAGTTTCATTAATGTTTCAATGTCCACTATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTATTCACATTAGCAGCTAAGGTTGCCCCGACTATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAGCGGACTAGAGTTGGAGAGCATGAGGCTATGAGGAAGATTAAAAATGAATTCATGACTCATTGGGATGGGCTATTAACATCACCTGGTGAGCAGATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTGGGTCTCCCATCTGCTGAGAATAGGGAAATGATCCTGAAAACTCTCCTAGCTAAGGAAAAGCACGAAAACTTGGACTTCAAAGAGCTGGCAACAATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGGGAGCTAATACAGCAAGAAAGACAAAGAATGAAGGAAATGGAAAAGAAGAAAAGAGAGGCAGAAGGCCAAAGCTCCGAAGATGCTTCAAATAATAAAGAAGACCAAGAAATTACCCTGAGGCCTTTGAACATGGAAGACATGAGACAGGCTAAGAGTCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCAGTAATGGCTGAGCTGAAACAATGGAACGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAACAACAGCTCACTTACTTCCTTTAG 2457 0.4143 MEQKHVFLSALSVGVGLGVGLGLSSGQKWVGGNRDSDEVSGEQIVEELKRLMIDGKDIKVTFDDFPYYLSERTRVLLTSAAYVHLKHLDFSKHTRNLSPASRAILLCGPAELYQQMLAKALAHSFESKLLLLDITDFSVKLQSRFGCSRKEPSFKRSISEMTLERMSGLFGSFSMLPSTGETKGTLRRQSSAVESFNNPPKLRRNASAASDISSTASQSGPTNPAPLRRTSSLCFDEKLFVQSLYKVLVSISETSSIILYIRDVEKLVLQSPRLYNLLQKMIKKLSGSVLILGSQILDSEDDSKEVDERLTVLFPYNIEIKPPEDETHLGSWKGQLEKDMKMIQFQDNRNHIAEVLAANDIDCEDLSSICHADTMILSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDIIGAKNDVRCDNQAPDNKSETEKSIPVTKKDGETPTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTSPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERQRMKEMEKKKREAEGQSSEDASNNKEDQEITLRPLNMEDMRQAKSQVAASFASEGSVMAELKQWNDLYGEGGSRKKQQLTYFL* 819
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01025 818 Coils Coil 727 751 - -
Rops5g01025 818 MobiDBLite consensus disorder prediction 736 764 - -
Rops5g01025 818 MobiDBLite consensus disorder prediction 435 488 - -
Rops5g01025 818 ProSitePatterns AAA-protein family signature. 648 667 IPR003960 GO:0005524|GO:0016887
Rops5g01025 818 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 817 - -
Rops5g01025 818 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 504 679 - -
Rops5g01025 818 Gene3D - 677 749 - -
Rops5g01025 818 Pfam ATPase family associated with various cellular activities (AAA) 545 675 IPR003959 GO:0005524|GO:0016887
Rops5g01025 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 732 IPR027417 -
Rops5g01025 818 MobiDBLite consensus disorder prediction 423 488 - -
Rops5g01025 818 Pfam AAA+ lid domain 697 742 IPR041569 -
Rops5g01025 818 Gene3D - 504 676 IPR027417 -
Rops5g01025 818 SMART AAA_5 541 678 IPR003593 GO:0016887
Rops5g01025 818 MobiDBLite consensus disorder prediction 180 226 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops5g01025 Rops-Chr5 20767824 20775827 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01025 505 742 Calmodulin-binding Proteins AT3G56690 38.843 1.81e-43 168
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01025 - - gmx:100804099 1420.22