Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01004 ATGGATTTTTGGAGCATGATATGTGGGGATTCTTGTTGTTCTAAGACTGGAGGAAGGCCTTTGTGTTATGATTCCTCATGCATCAATCATTTGGTGATCATTTTCTTTGATGTGTTACTGCTGATCCTGCTGTCATTCATTATGGTCCAGAAGTTTTTGTGGAGACCATATCTGGGTCTAATCCGGGTGGAAAGAGATTCAAACTTGCAGCTAGTTTCTGCTATAACCAATGGCTCTCTTGGGATGTTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAGAAGTTAAGGAAAACCCACACTGTTTTTCCTCTTAATTGCTGGTTGCTAGAACTCTTTCAGGGATTTACCTTGATGTTAGTAGGTTTAACTGTAAGTCTTCAGCTGAAACAACTTCCAAGAGCATGGTTGTGGCTATTTTCTATTCCTGTATTCTTTGCTTCTTGTATTTTCTGTGCTTCATCCATGTCATATGCAATTAGCAGGAGAGAACTGTCCCTCAAGGTAGCTTTAGATGCTCTATCTTTTCCAGGAGCAGTTTTACTGCTCTTATGCACATACAAAGCAGGTAAATGTGAAGACACTGACAGAGAAATTGATGAAAGCCTTTATGCCCCTTTGAATAGCACGTTAAATGAAGTTGATCCTATTAGCTATGTAACCCCATTTTCCAAAGCTGGATTCTTTAGTAGGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGTTGCGGGAATTGGACCGAGCAGAAAGTTGTTGTTTGTTGTTTGTACAACAGTTGAACAGTCAAAAACAAAAAGAACCATCATCACAATCATCAGTTTTATTGACAATAATTTTATGCCACCAAAGAGAGATTTTGATATCAGGATTCTTTGCTTTGCTCAAGGTACTCACTCTAACTTCTGGTCCTCTACTTCTGAATGCCTTTATATTGGTTGCAGAGGGTAACGAAAGTTTTAAGTATGAAGGTTATATATTGGCCATATCACTTTTCTTTATAAAGATCATAGAATCATTATCTCAAAGACAATGGTTTTTCCGCAGTAGACTTGTTGGGATGAAAGTTAGATCACTACTTACTGCAGTAATTTATAAAAAAATATTAAGGTTATCCAATGCTGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCAGACATGGACAACAATCCTCCAACTATGTCTTGCATTAGTACTTCTTTTCCGTGCTGTTGGACTAGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACTGTGCTTTGCAACACTCCACTAGCAAAGTTACAGCATAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTCGTGAATATGAAAGTTCTGAAGTTATATGCATGGGAAACCCATTTTAAAAATGCTATAGAAAACTTAAGAAATGTGGAACTCAAATTGTTAGCTGCAGTGCAGTTAAGAAAGGCATATAACATCATCCTCTTTTGGACCTCGCCTATTTTGGTCTCTTCTGCTTCTTTTGTGGCTTGTTACTTCCTGAAAGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTGGCAACTTTGCGCATTGTACAAGAGCCAATTACAGCCATCCCGGATGTTATTGGGGTGATCATTCAAGCCAAAGTTGCATTTGCTCGGATTGTTAAATTCCTTGAGGCACCAGAACTGCTGAGTGCAAATTTCGGGAACAGGTGCTTTAATGACAATCTCAGAGGCTCAATTTTAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGCATCAAAGGCAACACTAAGGAACATAAATTTGGAGGTTAGACATGGTCAAAAGGTGGCAATTTGTGGAGAAGTTGGCTCAGGCAAATCGACTCTCTTAGCAACAATTCTTGAAGAAGTTCCTAATACTAAGGGAACTATTGATGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAGACAGGCACAATACGAGAAAACATTTTGTTTGGATCTGATTTGGATGGTCAAAGATACCAAGAAACTCTTCAAAGATCTTCACTGGTGAAGGACCTTGAGATATTTCCCAATGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAACTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCCGAAATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACGAATTTGTTTAATGAATACATCATGGAAGGACTAAAAGAGAAAACTGTCTTACTCGTGACTCATCAAGTTGATTTCCTACCAGCATTTGATTCCATTTTGTTAATGTCAGATGGGGGAATCCTACAGGCTGCTCCTTATCATCACCTACTGACTTCAAGCAAGGAATTCCAAGACCTTGTCAATGCTCACAAGAAAACTGCTGGTTCTGACCAGCATGTAAATGTTACTTTTTCCCAGAGACATTCAGCTTGTGCTAAAGAGATTACACAAGCTTTCATGGAGAAGGATTTCAAAGCAGCAAATGGAAATCAATTAATTAAGCAAGAAGAGAGAGAGACAGGAGACACAGGGTTGAAGCCATACTTACAGTATCTGAATCAGATGAAAGGCTATATATATTTCTCTGTGGCTTCCCTTTGTCACCTAACGTTTATGATTTGTCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCGTGTCAGCACATTGCAGTTGATTGGAGTTTACTTCTTCATTGGAGCCATTTCAACAATTTTCTTGTTCACCAGAAGTCTACTTGTAGTTGCTTTGGGTCTTCAATCATCAAAATATTTATTTTTACAGTTAATGAACTCCCTTTTTCATGCACCCGTGTCTTTTTATGACTCTACACCACTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTGAGCATTACGGATCTTGATATGCCATTTAGCCTCACTTTTGCTATGGCAGGTACTATAAATTGTTATTCTAATCTTACAGTGTTAGCAGTTATCACTTGGCAAGTCTTGGTTGTCTCTATACCAATGGTTTATTTTGCAATTCGTTTGCAGAGATACTACTTTGCCTCCGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAATCCATTATAGCTAATCATGTAGCTGAAACTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGACCGATTTTTTGAGAAGAATCTTGATCTAATTGATATCAATGCTAGTGCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAATAGTCAGTGCAGTTGTTCTTGCCTCTGCTGCACTTTGCATGGTTATGCTTCCACCTGGGACATTCACCTCTGGCTTTATTGGCATGGCTCTATCTTATGGCCTTTCATTAAACAACTCCTTAGTATTTTCAATTCAAAGTCAATGCACTCTAGCAAATTATATAATCTCTGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCAAGAAGTAATAGAAGAAAATCGCCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAATGACTTGCAGATACGATATAGGCCTGATGGACCACTAGTACTTCATGGGATCACATGCACATTTAAAGCAGGACACAAGATTGGTATTGTTGGCAGGACAGGCAGTGGAAAGTCCACTCTGATAAGTGCTTTATTTCGTCTTGTGGAGCCAGTAGAAGGAAAAATTGTAGTTGACGGCATAGACATCTCATCTATTGGCCTTCATGATTTGAGGTCTCGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGACTGTTAGATATAATTTGGACCCTTTATCTCAACACACTGATCATGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGCTGTCCAAGAGAAAGAAGAGGGCTTGAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCGTGGGACAAAGGCAGTTATTCTGTTTGGGACGTGCTCTTTTGAGGAGAAGTAGGATATTGGTGCTGGATGAAGCAACTGCATCAATTGATAATGCCACTGATTTGATTCTGCAGAAAACCATCAGGACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACAGTCATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGTGGAGTATGATGAGCCAATGAGTTTGATGAAGAGAGAAGGATCACTGTTCAGGCAGCTTGTCAAGGAATACTGGTCTCATTTTCAGTCTGCTGAATCACATTGA 4416 0.3965 MDFWSMICGDSCCSKTGGRPLCYDSSCINHLVIIFFDVLLLILLSFIMVQKFLWRPYLGLIRVERDSNLQLVSAITNGSLGMLHLCLGIWVLEEKLRKTHTVFPLNCWLLELFQGFTLMLVGLTVSLQLKQLPRAWLWLFSIPVFFASCIFCASSMSYAISRRELSLKVALDALSFPGAVLLLLCTYKAGKCEDTDREIDESLYAPLNSTLNEVDPISYVTPFSKAGFFSRMSFWWLNPLMKRGQEKTLQDEDIPKLRELDRAESCCLLFVQQLNSQKQKEPSSQSSVLLTIILCHQREILISGFFALLKVLTLTSGPLLLNAFILVAEGNESFKYEGYILAISLFFIKIIESLSQRQWFFRSRLVGMKVRSLLTAVIYKKILRLSNAARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTILQLCLALVLLFRAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWETHFKNAIENLRNVELKLLAAVQLRKAYNIILFWTSPILVSSASFVACYFLKVPLHANNVFTFVATLRIVQEPITAIPDVIGVIIQAKVAFARIVKFLEAPELLSANFGNRCFNDNLRGSILIKSADFSWEGNASKATLRNINLEVRHGQKVAICGEVGSGKSTLLATILEEVPNTKGTIDVYGKFAYVSQTAWIQTGTIRENILFGSDLDGQRYQETLQRSSLVKDLEIFPNGDLTEIGERGVNLSGGQKQRIQLARALYQNAEIYLLDDPFSAVDAHTATNLFNEYIMEGLKEKTVLLVTHQVDFLPAFDSILLMSDGGILQAAPYHHLLTSSKEFQDLVNAHKKTAGSDQHVNVTFSQRHSACAKEITQAFMEKDFKAANGNQLIKQEERETGDTGLKPYLQYLNQMKGYIYFSVASLCHLTFMICQILQNSWMAANVDNPRVSTLQLIGVYFFIGAISTIFLFTRSLLVVALGLQSSKYLFLQLMNSLFHAPVSFYDSTPLGRILSRVSSDLSITDLDMPFSLTFAMAGTINCYSNLTVLAVITWQVLVVSIPMVYFAIRLQRYYFASAKEVMRMNGTTKSIIANHVAETVAGAVTIRAFEEEDRFFEKNLDLIDINASAFFHSFASNEWLIQRLEIVSAVVLASAALCMVMLPPGTFTSGFIGMALSYGLSLNNSLVFSIQSQCTLANYIISVERLNQYMHIPSEAQEVIEENRPPLNWPVAGKVEINDLQIRYRPDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPVEGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHTDHEIWEVLGKCQLREAVQEKEEGLNSSVVEDGSNWSVGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPMSLMKREGSLFRQLVKEYWSHFQSAESH* 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01004 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 839 IPR003439 GO:0005524
Rops5g01004 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 946 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01004 1471 CDD ABCC_MRP_domain1 616 815 - -
Rops5g01004 1471 FunFam ABC transporter C family member 5 874 1206 - -
Rops5g01004 1471 SUPERFAMILY ABC transporter transmembrane region 910 1205 IPR036640 GO:0005524|GO:0016020
Rops5g01004 1471 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Rops5g01004 1471 Gene3D - 1208 1460 IPR027417 -
Rops5g01004 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1214 1458 IPR027417 -
Rops5g01004 1471 FunFam ABC transporter C family member 3 1208 1460 - -
Rops5g01004 1471 SUPERFAMILY ABC transporter transmembrane region 289 597 IPR036640 GO:0005524|GO:0016020
Rops5g01004 1471 CDD ABCC_MRP_domain2 1223 1443 - -
Rops5g01004 1471 Gene3D - 603 862 IPR027417 -
Rops5g01004 1471 FunFam ABC transporter C family member 10 602 852 - -
Rops5g01004 1471 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 223 1459 - -
Rops5g01004 1471 Pfam ABC transporter transmembrane region 300 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01004 1471 Pfam ABC transporter transmembrane region 910 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01004 1471 CDD ABC_6TM_ABCC_D1 302 589 IPR044746 GO:0140359
Rops5g01004 1471 Gene3D ABC transporter type 1, transmembrane domain 271 597 IPR036640 GO:0005524|GO:0016020
Rops5g01004 1471 Gene3D ABC transporter type 1, transmembrane domain 873 1207 IPR036640 GO:0005524|GO:0016020
Rops5g01004 1471 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Rops5g01004 1471 FunFam ABC transporter C family member 10 284 597 - -
Rops5g01004 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1225 1459 IPR003439 GO:0005524
Rops5g01004 1471 CDD ABC_6TM_ABCC_D2 911 1200 IPR044726 GO:0140359
Rops5g01004 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 301 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01004 1471 Pfam ABC transporter 1242 1390 IPR003439 GO:0005524
Rops5g01004 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 839 IPR027417 -
Rops5g01004 1471 SMART AAA_5 643 816 IPR003593 GO:0016887
Rops5g01004 1471 SMART AAA_5 1251 1443 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01004 Rops-Chr5 20158391 20165352 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01004 610 831 Calmodulin-binding Proteins AT2G36910 29.237 1.65e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01004 K05666 - gmx:100787314 2412.49