Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01002 ATGGGTCTCGATCCTCTTGGTTGGAAGGAAAAGACAAGGAAATCTGAAAATGTTACGGTTTCTTCTCACCAAAATTTACTTGCTACGGGTTCTTATAAAAACCTGAAGGATATAGATAAGTTGTTCTCGGTGATTACTGAAGTTGACAGAGGATTGATTGGAGAAAATAAAGCCCGCTTCTGTGTTGCCATAGACTCGCTAAGCGAACTGATGAGACATGCATCTTTGCAGTCGGTTGCTGGCCTTCTAAGCAATCTGCGTAGCCATGATCAAATTTCAAGTATTTTTGGGCTATTGCATTCTGACCTTCACGAGGAGAGGGCTGCAGCTGTTCTCGAGTACATGTCCTCCATTGTGGCCAGTGTAGAACCATTTCATCATTCTGCTGATAGTCCATATGCTGGAGGTGTATTTCTAGTTACCATCCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCGTTTAGGACTAAGGTCTTTCACCCAAATATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAACAGTGGAGTCCTGCTCTTACCATCTCTAAGGTACTACTTTTTATCTGCTCACTGCTGACTGATCCAAACCCGGATGACCCACTTGTACCTGAGATTGCTCACATGTACAAAAGTGACCGAGCTAAGTATGAGGCCACTGCACGCAGCTGGGAAGGCGGTGGCTATTTGTCATTGGAAGATTCTCGAGGTTCTGCCAAAACAATATTCTTGGAAGAAGGTTTTCTTGACTTTTTGAACAAGGAGCTTCAATCATATCATTATGATAAAAATGAATATGAAGATGCAGTCCTTGCCAACCTTGCACCCGAAGTGTCTTCAAGAGCAGTAAACAAGTCCACCATAGCAGAACTTGTGAGGCTCTATAAAGGGTCTGACCGCGGGATGAGGATTCCAGCTTATGATGGCAGAAAAAGTCTGTACACTGCAGGGACACTTCCCGTTTCCTGGAGAGAGTTTAAGATCAAGTTTGTTGCACGTGCAAACTTGTATCACTTGGGGCAGCTCCTAGCTGGAGCCGATTCTCGGATAGATGGGAAGGTGTACCATAGTCACAATGGACCGGCACCACATTTTCACGAACCCATATGCTCTCCCGGCTTCTGCGGCAGAAGAGCTCCACCCCTTCACAACAGAAATTTCAATGAGAAAGCTTTTACTGTTGGCATTGGTGGGCCTGTGGGTACTGGGAAAACTACTTTGATGTTGGCCCTTTGTAAATGTTTGCGAGATAAGTATAGTCTCACAGCTGTGACAAATGATATATTCATAAAAGAAGATGGTGAGTTCTTGGTGAAACACAAAGCACTTCCAAAGGAAAGGGTACGCGCTGTAGAAACTGGAGGCAGCCTCACATGCATTTGGGTCTACCTTGGAAGGGCCTTCCCAAGACCATCCAGGCACCATTTACGTTCGGGTAGGGTTGCTGAGAAGGACCATGCTTGGTGGGAGAGGCATGAGGACATGGATACCCCGAGAAAATAA 1518 0.4532 MGLDPLGWKEKTRKSENVTVSSHQNLLATGSYKNLKDIDKLFSVITEVDRGLIGENKARFCVAIDSLSELMRHASLQSVAGLLSNLRSHDQISSIFGLLHSDLHEERAAAVLEYMSSIVASVEPFHHSADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLFICSLLTDPNPDDPLVPEIAHMYKSDRAKYEATARSWEGGGYLSLEDSRGSAKTIFLEEGFLDFLNKELQSYHYDKNEYEDAVLANLAPEVSSRAVNKSTIAELVRLYKGSDRGMRIPAYDGRKSLYTAGTLPVSWREFKIKFVARANLYHLGQLLAGADSRIDGKVYHSHNGPAPHFHEPICSPGFCGRRAPPLHNRNFNEKAFTVGIGGPVGTGKTTLMLALCKCLRDKYSLTAVTNDIFIKEDGEFLVKHKALPKERVRAVETGGSLTCIWVYLGRAFPRPSRHHLRSGRVAEKDHAWWERHEDMDTPRK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01002 505 Coils Coil 254 274 - -
Rops5g01002 505 CDD UBCc 129 229 IPR000608 -
Rops5g01002 505 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 74 235 IPR000608 -
Rops5g01002 505 Gene3D Ubiquitin Conjugating Enzyme 120 232 IPR016135 -
Rops5g01002 505 Pfam CobW/HypB/UreG, nucleotide-binding domain 399 460 IPR003495 -
Rops5g01002 505 Pfam Ubiquitin-conjugating enzyme 128 228 IPR000608 -
Rops5g01002 505 SUPERFAMILY UBC-like 128 230 IPR016135 -
Rops5g01002 505 Gene3D - 394 472 IPR027417 -
Rops5g01002 505 PANTHER UREASE ACCESSORY PROTEIN G 355 461 IPR004400 GO:0003924|GO:0006807|GO:0016151
Rops5g01002 505 CDD Elp5 54 122 - -
Rops5g01002 505 SMART ubc_7 90 235 - -
Rops5g01002 505 Pfam Elongator subunit Iki1 56 130 IPR019519 GO:0002098|GO:0033588
Rops5g01002 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 469 IPR027417 -
Rops5g01002 505 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 162 177 IPR023313 -
Rops5g01002 505 FunFam Ubiquitin-conjugating enzyme E2 D2 111 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01002 Rops-Chr5 20120537 20123388 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01002 267 350 Eukaryotic Initiation Factors Gene Family AT5G43810 51.402 4.54e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01002 K06689 K11376 gmx:100794562 212.616