Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01001 ATGGAGGATTTTTGGAGAATGATTTGTGGAGATTCTGGTTCTAAGAATGGAGGAGAGCCTTTCTGTTATGATTTCAAACTTCTGAAAGATCCTTCCACATGCATCAACCATTTATTGGTCATTTGCTTTGATGTGTTGCTGTTGATCATGTTGTCACTCATTATGATCCTGAGGTCTTCGTCGAAACCATATTGGAGTCTGATAAGATGTTCAAAGTTGCAGCTAGTTTCTGCCATAACCAATGGCTCTCTTGGGTTGTTGCATTTATGCTTTGGCATTTTGTTTTTAGAGGAAGAGTTAAGGAATACCCACAAAGTCTTTCCTCTTCACTGGTGGTTGTTAGAACTCTTTCAGGGATTCAAGTGGTTGCTAGTAGGTGTAACTATAAGTCTTCAGCTGAAACAACTTCCAAGAGCATGGTTATGGCTCTTTTCTATTGTTATATTCTTTGTTTCTGCTATCTTTTGTGCTTTATCCATGTCTTATGCAATTAGCAGAAAAGAATTGTCCCTCAAGGCAGCTTTAGATGTTCTATCTTTTCCAGGAGCAATTTTACTGCTCTCATGCACATACAAAGCAGGTAAATGTGAAGAAAACAGAGAAATTGATGAAAGCCATTACGCCCCTCTGAATAGCCAGTTCAATGAACTTGATCCTATTAGCTATGTTACCCCATTTGCCAAAGCTGGATTCTTTAGTAGGATGTCGTTTTGGTGGTTGAATCCATTAATGAAAAGGGGTCAAAAGAAAATACTTCAGGATGAGGATATCCCAAAGTTGCAGGAGTCAGATCGAGCAGAAAGTTGTTATTTGTTGTTTGTAGAACAATTGAACAGTAAAAAACAAAAAGAACAATCATCACAGTCATCGGTTTTATGGACATTAATTTTGTGCCACCGGATAGAGATTTTGATATCAGGATTCTTTGCTTTGCTCAGGGTACTAGCTCAATCTTGTGGTCCTCTACTTCTGAATGCCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTATTGGCCATAGCACTTTTCTTTATAAAGTTCATAGAATCTCTAGCACAAAGGCAATGGTATTTCTGCTGTAGACTTGTTGGGATGAAAGTTAGGTCACTTCTTACTGCAGCCATTTATAAAAAAATGTTAAGATTGTCCAACGCTGCTCGATTGATGCATTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCATACTTGGACAACAATCCTCCAACTATGTATTGCATTGGTAATTCTTTTCCGTGCTGTTGGACTGGCAACAATTGCCTCATTGGTGGTGATAGTTGTCACTTTGTTTTGCAACACTCCACTGGCAAAGTTAATGCATAAGTTTCAGAGAGAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCAGAGGCTCTCGTGAATATGAAAGTTCTGAAGCTATATGCATGGGAAACCCATTTTAAAAATGCTATAGAAAACTTAAGAAATGTGGAACTCAAATTGTTATCTTCAGTGCAGTTAAGAAGGGCGTACAATATCTTTCTCTTTTGGACCGCTCCTATTTTGATCTCTTCTGCTTCTTTTGTGGCTTGTTACTTCCTGAATGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTGGCTACTTTGCGCCTTGTGCAAGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGATCATTCAAGCAAAAGTTGCATTAGCCAGGATTGTTAAACTCCTTGAAGCACCAGAATTGCTGAGTGCAAATTTCAGGAACAGATGCTTTAATGACAATCTTAGAGGGTCAATTTTGATCAAATCTGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGGAACATAAATTTGGAGGTTAGACCTGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCAACCATTCTTGGAGAAGTTCCTAATACAAAGGGAACTGTTGATGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAGTCAGGTACAATACGAGAAAATATTTTGTTTGGATCTGATTTGGAGGCACAAAGATATCAAGAAAGTCTTCAAAGATCTTCACTGTTGAAGGACCTTGAGTTGTTTCCCCATGGTGACCTTACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGTGGTCAGAAGCAGCGAATTCAACTTGCCCGTGCTCTTTATCAGAATGCTGATGTGTATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAATTTGTTTAATGAATACATCATGGAAGGACTTAAAGAGAAAACTGTCTTACTTGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGATTCTGTTTTGTTAATATCAGATGGGGGAATTCTACAAGCTGCTCCTTACAACTATCTACTGACATCAAGCAAGGAATTCCAAGACCTTGTCAATGCTCACAAGGTGACTGCTGGTTCTGACCAGCTGGTGAATGTTACTTTTTCCCAGAGACATTCAACTAGAGCTAAAGAGATTACACAAGCCTTCATGGAGAAGGATTTTAAAGCAGCAAATGGAAATCAATTAATTAAGCAAGAAGAGAGAGAGACAGGAGACACAGGGTTGAAGCCATACTTACAGTATCTGAATCAGATGAAAGGCTATATATACTTCTCTCTGATTTCCCTCAGTATCCTTGCATTTGTGATTTGTCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCATGTCAGCACGATGCAATTGATTGTAGTTTACTTCCTCATTGGAGCTATTTCAACATTTTTCTTGTTGATCAGAAGTCTGCTTATAGTTGGTTTGGGTAATCAGTCATCAAAATATTTATTTTTACAGTTAACGAACTCCCTTTTTCGTGCACCCATGTCCTTTTATGACTCTACACCACTGGGAAGGATACTTAGTAGGGTATCATCAGATCTGAGCATAATGGATCTTGATATCCCATTTAGCCTCACTTTTGGTATGTCAGGCATTATAATTTGTTATTCAAATCTTATAGTTTTAGCAGTTGTCACTTGGCAAGTCTTGGTTGTCTCTATACCAATGGTTTATGTTGCAATTCGCTTGCAGAGATACTACTTTACCTCAGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAATCCTTTTTAGCAAATCATTTAGCTGAAACTGTTGCTGGAGCTATGACAATAAGGGCTTTCGAGGAGGAAGACCGTTTCTTTGAGAAGAATCTTGATCTAATTGATATCAATGCTAGTGCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGCTAGAATTAGTCAGCGCAGCTGTTCTCGCCTCTGCAGCGCTTTGCATGGTTATGCTTCCACCTGGGACTTTCACCTCAGGATTTATTGGCATGGCTCTATCTTATGGCCTTTCACTAAATGCTTCCTTAGTATTTTACATTCAAAGTCAATGCACTCTTGCAAATCATGTAATATCTGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCAAGAAGTAATTGAAGGAAATCGTCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAATGACCTGCAGATACGATATAGGCCTGATGGACCACTAGTGCTTCATGGGATCACATGCACATTTAAAGCAGGACACAAGATTGGTATTGTGGGAAGGACAGGCAGCGGGAAGTCCACACTGATAGGTGCTTTATTTCGTCTTGTAGAGCCAGCAGGAGGAAAAATTGTAGTTGATGGCATAGACATCTCATCTATTGGCCTTCACGATTTGAGGTCTCGTTTTGGTATTATACCTCAAGATCCTACCCTTTTTAATGGGACAGTTAGATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGATAAGTGTCAGTTGCGAGAAGCTGTCCAAGAGAAAGAAACGGCCTTAAACTCCTTAGTTGTTGAAGATGGATCAAACTGGAGCGTGGGACAAAGGCAGTTATTCTGTTTGGGGCGTGCTCTTTTGAGGAGAAGTAGGATATTGGTGCTGGATGAAGCAACTGCATCAGTTGATAATGCAACTGATTTGATTCTGCAGAAAACCATCAGGACTGAGTTTGCAGATTGTACAGTGATCACAGTCGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAAGTGGCGGAGTATGATGAGCCAGTGAGCTTGATGAAGAGAGAAGCATCGCTGTTCAGGCAGCTGGTCAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCACATTGA 4425 0.3973 MEDFWRMICGDSGSKNGGEPFCYDFKLLKDPSTCINHLLVICFDVLLLIMLSLIMILRSSSKPYWSLIRCSKLQLVSAITNGSLGLLHLCFGILFLEEELRNTHKVFPLHWWLLELFQGFKWLLVGVTISLQLKQLPRAWLWLFSIVIFFVSAIFCALSMSYAISRKELSLKAALDVLSFPGAILLLSCTYKAGKCEENREIDESHYAPLNSQFNELDPISYVTPFAKAGFFSRMSFWWLNPLMKRGQKKILQDEDIPKLQESDRAESCYLLFVEQLNSKKQKEQSSQSSVLWTLILCHRIEILISGFFALLRVLAQSCGPLLLNAFILVAEGNESFKYEGYVLAIALFFIKFIESLAQRQWYFCCRLVGMKVRSLLTAAIYKKMLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHHTWTTILQLCIALVILFRAVGLATIASLVVIVVTLFCNTPLAKLMHKFQRELMVAQDERLKASSEALVNMKVLKLYAWETHFKNAIENLRNVELKLLSSVQLRRAYNIFLFWTAPILISSASFVACYFLNVPLHANNVFTFVATLRLVQEPITAIPDVIGVIIQAKVALARIVKLLEAPELLSANFRNRCFNDNLRGSILIKSADFSWEGNVSKPTLRNINLEVRPGQKVAICGEVGSGKSTLLATILGEVPNTKGTVDVYGKFAYVSQTAWIQSGTIRENILFGSDLEAQRYQESLQRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMEGLKEKTVLLVTHQVDFLPAFDSVLLISDGGILQAAPYNYLLTSSKEFQDLVNAHKVTAGSDQLVNVTFSQRHSTRAKEITQAFMEKDFKAANGNQLIKQEERETGDTGLKPYLQYLNQMKGYIYFSLISLSILAFVICQILQNSWMAANVDNPHVSTMQLIVVYFLIGAISTFFLLIRSLLIVGLGNQSSKYLFLQLTNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDIPFSLTFGMSGIIICYSNLIVLAVVTWQVLVVSIPMVYVAIRLQRYYFTSAKEVMRMNGTTKSFLANHLAETVAGAMTIRAFEEEDRFFEKNLDLIDINASAFFHSFASNEWLIQRLELVSAAVLASAALCMVMLPPGTFTSGFIGMALSYGLSLNASLVFYIQSQCTLANHVISVERLNQYMHIPSEAQEVIEGNRPPLNWPVAGKVEINDLQIRYRPDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLDKCQLREAVQEKETALNSLVVEDGSNWSVGQRQLFCLGRALLRRSRILVLDEATASVDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKVAEYDEPVSLMKREASLFRQLVKEYWSHFQSAESH* 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01001 1474 CDD ABC_6TM_ABCC_D1 305 592 IPR044746 GO:0140359
Rops5g01001 1474 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Rops5g01001 1474 SUPERFAMILY ABC transporter transmembrane region 292 597 IPR036640 GO:0005524|GO:0016020
Rops5g01001 1474 CDD ABC_6TM_ABCC_D2 914 1203 IPR044726 GO:0140359
Rops5g01001 1474 Pfam ABC transporter transmembrane region 303 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01001 1474 Pfam ABC transporter transmembrane region 916 1164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01001 1474 FunFam ABC transporter C family member 10 603 855 - -
Rops5g01001 1474 Gene3D ABC transporter type 1, transmembrane domain 274 600 IPR036640 GO:0005524|GO:0016020
Rops5g01001 1474 Gene3D ABC transporter type 1, transmembrane domain 876 1210 IPR036640 GO:0005524|GO:0016020
Rops5g01001 1474 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 584 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01001 1474 FunFam ABC transporter C family member 10 287 600 - -
Rops5g01001 1474 SUPERFAMILY ABC transporter transmembrane region 901 1208 IPR036640 GO:0005524|GO:0016020
Rops5g01001 1474 Gene3D - 602 864 IPR027417 -
Rops5g01001 1474 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1228 1462 IPR003439 GO:0005524
Rops5g01001 1474 CDD ABCC_MRP_domain1 619 818 - -
Rops5g01001 1474 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 226 1462 - -
Rops5g01001 1474 SMART AAA_5 646 819 IPR003593 GO:0016887
Rops5g01001 1474 SMART AAA_5 1254 1437 IPR003593 GO:0016887
Rops5g01001 1474 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Rops5g01001 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 842 IPR027417 -
Rops5g01001 1474 FunFam ABC transporter C family member 5 877 1209 - -
Rops5g01001 1474 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 916 1191 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g01001 1474 CDD ABCC_MRP_domain2 1226 1446 - -
Rops5g01001 1474 Pfam ABC transporter 1245 1393 IPR003439 GO:0005524
Rops5g01001 1474 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 842 IPR003439 GO:0005524
Rops5g01001 1474 Gene3D - 1212 1463 IPR027417 -
Rops5g01001 1474 FunFam ABC transporter C family member 3 1211 1463 - -
Rops5g01001 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1218 1461 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01001 Rops-Chr5 20073367 20079703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01001 592 986 Calmodulin-binding Proteins AT2G36910 24.221 2.92e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01001 K05666 - gmx:100787314 2343.93