Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00988 ATGGCAGACCGTGACATTGAGCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCCTCTTTAATCTGGATTTCTAGCAGTGGAGAAAGAAATCTGAAACTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACCGCTGTTTTCCAACGTTACCTGCGTCCTGAAAAGGATTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTTCTGGTCTCAAAGCTCTGATATCTTCTGGTCAAGGAGGTCGGTCCAAAATAGATGGATGGAGTGATGAGGGCCTCAATCTCCATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGAAAGTTCAGCTGCGTCACGAGACATCAGTTCTCCTGACATTTCTGTGAGTCTTCCTTCACCAAAGTCCTTTCAGCTTGACAATACCTTAAATTTTGAAAGGTCACATGCACCATCAGACCCAACAAATGTGCAAGTAAAAGGAACTGGTTCAGATGCTTTTCGTTTTAGTGTTTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGATTATCTGTGAAAACGTGAAATTTGGTGCCGATAAAAGTGCCAATTACTTTGGCCCGAGAGCAGGTGTTCTTCTCCCCAGACCACTGGAATCAAATGTAGTTTTAGATGTACGTCATATAGCTTGTGGTGTTAGACATGCTTCTTTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCAGGAGGATGCCTTGGCCATGGTGTAGGGGAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTGCTTGGTCATGGCACTGATGTTAGTCATTGGATACCTAAGAGAATTGCAGGTCCATTAGAGGGACTTCAAGTTGCATTTGTTGCTTGTGGTCCATGGCACACGGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACTTTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAAGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACAGCAGCTGTTGTAGAGGTTATTGCAACACAATCTAGTGCGAGTGTATCATCAAGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGGCAGGGGGACAAGGAGGCACGGCTTAAACCAACTTGTGTGCCTGATCTTGTCGATTACAATTTTCATAAAATTGCTTGTGGGCACAATTTGACTGTAGGCCTGACAACATCTGGATGTGTTTTTACAATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCCAATGGAAAGCTGCCTTGCTTGGTTGGAGACAAGATTGCTGGGGAATCCATTGAAGAAATTGCATGTGGTGCATATCATGTGGCTGTTTTAACATCCAACAATGAAGTTTATACTTGGGGTAAGGGTGCAAATGGGAGATTGGGTCATGGAGATCTTGAAGATCGAAAAACACCTGCTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCGGCTGCTATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCACTCTCAGTGTTCTGCTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAACTGTGAACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCTTTAGGAGCAGCACTGGCTCCTAATCCTGGCAAGTCATATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCAGAAGCTAACAATAATAATCGGAGGAATGCTTTGCCACGTCTGTCAGGTGAAAACAAGGATAGGTTAGACAAGTCTGAGTTAAGATTGTCCAAGTCTGTAGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGAAAGAAGGCTGATACGTTCTCACTAGTTCGGACCTCACAAGCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTCTCCACTGCTGTTGATCTGAGACGAACTGTTCCAAGACCAGTGTTTGCACCATCTGGAGCTAGTTCCAGGTCTGTGTCCCCTTTATCTAGAAGACCAAGCCCCCCTTGTTCGGCTACACCTATGCCAACGACATCGGGACTTTCTTTCTCCAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACGTGCTCAGGTCGAGAGCCTGAGGCAGAGATGTGAACTACAAGAATTAGATCTTCAAAGGTCAGCAAAAAAGACTAAAGAAGCTATGGCACTGGCTGTTGAAGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACGGCGCAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTTTATGATGCTGAGAATATTAGACCAACTTACCTACCAAATGGTGTTGAGTCAAATGGCATCCACTATACAGATTCAAATGGGGAGCAACACTCAAGGGCAGAATCAATCAGTGGCTCTAGTTTGGCCTCCATAGAACTTGAATCCTCTCTGTTGAATAGAACTGCAGAGAATTTGCCAGGAGCCTATGCAACTAATCTTCACCAGCAAATCCGAGGCCTTGTGACCTCTAATGGGACCGATAAACATCCAGATGTTAAATTGCCAAATGGTGGTGGTTTGATTCAGGAAAGTAGCAGTAGCATGTCAGATACTGTTGATGGTAGGGATTCTGGGCATTCCCATGACGACGAAAATGGTTTGAAATCAAGGAATGCTATACTGGCTGCTAATGGTAACCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTTGTGGCCCTGCGTGATGGAACAAGAGATTTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGAGAAAAAGTATATGAAAAATACAATATTCGTAGTGTGGTAAAGTCTTCCAATCAAGCAGCATGTAGGGCAGAGGGTGCTGGTTCTCCTGTTCAAAAAAAAGTAGAGGGAGGGAAGTTCTCCATTAACACTTTTTTGTCACACTGGAACAAATTGTAG 3384 0.432 MADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWISGLKALISSGQGGRSKIDGWSDEGLNLHDSRDLTSNSPSESSAASRDISSPDISVSLPSPKSFQLDNTLNFERSHAPSDPTNVQVKGTGSDAFRFSVSSAPSTSSHGSAPDDYDALGDVYIWGEIICENVKFGADKSANYFGPRAGVLLPRPLESNVVLDVRHIACGVRHASLVTRQGEVFTWGEESGGCLGHGVGENVVQPRLVEALTSTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSRLRTIAVACGVWHTAAVVEVIATQSSASVSSSKLFTWGDGDKNRLGQGDKEARLKPTCVPDLVDYNFHKIACGHNLTVGLTTSGCVFTMGSTVYGQLGNPQSNGKLPCLVGDKIAGESIEEIACGAYHVAVLTSNNEVYTWGKGANGRLGHGDLEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSGAEHSQCSACRQAFGFTRKRHNCYNCELVHCHSCSSRKALGAALAPNPGKSYRVCDSCYAKLNKVAEANNNNRRNALPRLSGENKDRLDKSELRLSKSVVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVFSTAVDLRRTVPRPVFAPSGASSRSVSPLSRRPSPPCSATPMPTTSGLSFSKSIADSLKKTNELLNQEVQKLRAQVESLRQRCELQELDLQRSAKKTKEAMALAVEESAKSKAAKEVIKSLTAQLKDLAEKLPPGVYDAENIRPTYLPNGVESNGIHYTDSNGEQHSRAESISGSSLASIELESSLLNRTAENLPGAYATNLHQQIRGLVTSNGTDKHPDVKLPNGGGLIQESSSSMSDTVDGRDSGHSHDDENGLKSRNAILAANGNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNIRSVVKSSNQAACRAEGAGSPVQKKVEGGKFSINTFLSHWNKL* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 337 IPR000408 -
Rops5g00988 1127 MobiDBLite consensus disorder prediction 138 169 - -
Rops5g00988 1127 Gene3D - 170 445 IPR009091 -
Rops5g00988 1127 Gene3D - 446 618 IPR009091 -
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Rops5g00988 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 689 IPR013083 -
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Rops5g00988 1127 Coils Coil 868 888 - -
Rops5g00988 1127 Pfam Transcription factor BRX N-terminal domain 863 898 IPR027988 -
Rops5g00988 1127 CDD FYVE_like_SF 621 674 - -
Rops5g00988 1127 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 50 883 - -
Rops5g00988 1127 Pfam FYVE zinc finger 612 678 IPR000306 GO:0046872
Rops5g00988 1127 ProSiteProfiles BRX domain profile. 1029 1084 IPR013591 -
Rops5g00988 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 379 389 IPR000408 -
Rops5g00988 1127 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Rops5g00988 1127 PRINTS Chromosome condensation regulator RCC1 signature 395 409 IPR000408 -
Rops5g00988 1127 PRINTS Chromosome condensation regulator RCC1 signature 497 515 IPR000408 -
Rops5g00988 1127 PRINTS Chromosome condensation regulator RCC1 signature 288 304 IPR000408 -
Rops5g00988 1127 PRINTS Chromosome condensation regulator RCC1 signature 338 354 IPR000408 -
Rops5g00988 1127 PRINTS Chromosome condensation regulator RCC1 signature 555 576 IPR000408 -
Rops5g00988 1127 MobiDBLite consensus disorder prediction 771 806 - -
Rops5g00988 1127 MobiDBLite consensus disorder prediction 969 1012 - -
Rops5g00988 1127 Pfam Pleckstrin homology domain 7 115 IPR001849 -
Rops5g00988 1127 Pfam Transcription factor regulating root and shoot growth via Pin3 1028 1083 IPR013591 -
Rops5g00988 1127 CDD PH_PLC_plant-like 4 116 - -
Rops5g00988 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Rops5g00988 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 457 502 IPR000408 -
Rops5g00988 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 338 389 IPR000408 -
Rops5g00988 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 286 334 IPR000408 -
Rops5g00988 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 561 608 IPR000408 -
Rops5g00988 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 393 441 IPR000408 -
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 392 IPR000408 -
Rops5g00988 1127 MobiDBLite consensus disorder prediction 136 169 - -
Rops5g00988 1127 Gene3D - 5 121 IPR011993 -
Rops5g00988 1127 FunFam Putative E3 ubiquitin-protein ligase HERC1 4 124 - -
Rops5g00988 1127 FunFam PH, RCC1 and FYVE domains-containing protein 1 196 445 - -
Rops5g00988 1127 FunFam PH, RCC1 and FYVE domains-containing protein 1 446 617 - -
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 285 IPR000408 -
Rops5g00988 1127 MobiDBLite consensus disorder prediction 985 999 - -
Rops5g00988 1127 SUPERFAMILY RCC1/BLIP-II 224 613 IPR009091 -
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Rops5g00988 1127 SUPERFAMILY PH domain-like 5 115 - -
Rops5g00988 1127 SMART fyve_4 610 679 IPR000306 GO:0046872
Rops5g00988 1127 SUPERFAMILY FYVE/PHD zinc finger 612 686 IPR011011 -
Rops5g00988 1127 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 616 678 IPR017455 -
Rops5g00988 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Rops5g00988 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 444 IPR000408 -
Rops5g00988 1127 Coils Coil 812 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00988 Rops-Chr5 19336049 19345466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00988 1030 1100 Major Intrinsic Protein MIP AT1G31880 45.070 1.29e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00988 - - gmx:100805364 1833.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00988 5 19336049 19345466 Rops6g02627 6 47098182 47106255 PCT