Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00983 ATGACAAGGTTAAGGGAGAAGCTATACGTTACCGTTCCGAGCCTCTTTCGGTGTCCAATCTCAATGGACGTGATGAGGTCTCCAGTGATTCTGTGCACCGGCGTCACATACGATCGCTCCAGCATCCAACACTGGCTCGACTCAGGTCATGACACGTGTCCCGTTACCATGCAGGTTCTTCCCTCCAAGGATTTCATCCCTAACCTCACACTCCACCGCCTCTGGCTCCTCTCCGGCGAACCTTCCTCTCCGGATCCTCGATCCTCCGGCCAACCTTCCTCCTCCGGCGACCACCTCCGCGATCTTATCAACGGAATCCAAACTAGCGACGAAGACCTTGCCGTTTCACTTTCGAAAATCGCCGAATTCGCTAATATTTCCAGCGAGAATCGTCGATTGCTCGCCACCTTCCCTGGCTTCGAATCTGCCATTGTTCGTTCTCTAGCCAGAAGCAAATCACGGATCGACGCGTCAGAAAAGGTGATATCGGTTCTGGATTTGGTTTTCCGGGAAAACGGAAATGTTACCGTCGCCGGCGAGAGAATCCGGCGGTTGATTCTCAATGCTCGAGAAGAATTCTTCGGTTCGTTCATCTCCGTTTTGAGAAACGGTTCTCTTGAATCGAAAATTGAAACGGTTAGGGTTTTCGAGTTTCTTGCGTGCGATTTTCAATCGAAGAGGTCAATCGCTGAAACGCGGGGTTTGTTGTCGTTGCTAATGAGTCTTTTAAAGGAGGAAAAATGCGAGGGGCTAAACGACGCCGTTTTATCGCTACTTGCTGTCGTTTCGGTCACTCAGTCAGTGAAGGTTGAACTCGTCCGTTCCGGACTCGTCGAGTTGCTTTCAAAGATGCTCCTGAGCCCCGCGTGCGGAGGTTCAACGGCGGAGAGGTGCCTGAGGATGTTGGCCGTTGCGGCGACGTGCGCGGAGGGGAGGGAGGCAATGGTTAAGGAGCCTTCGTGCGCGGCGGCGGTTATGGAGAGGATGGCGAAGGCGCCGAAGGCCGCGGCGGAGGATGCGGTGGCTGTTTTGTGGAGCTTGTGTTGTTTGTGCGGTAACGTGAAGGTGAGGGATGACGTGGCAAAGCGAAACGGTATCGCTGTGATACTATTGGTTATGCAGAGGGGTTGGCATGAGCACGTGAGGAGCATGTGCGTCGATTTGATTAAGGTTTTGAAGGGTGCGTGTAGGAATGGGTTGCCTCTGGCACTGGGAAGTTATGATACCAAAACCACTCATATCAAACCTTGTTAA 1254 0.5279 MTRLREKLYVTVPSLFRCPISMDVMRSPVILCTGVTYDRSSIQHWLDSGHDTCPVTMQVLPSKDFIPNLTLHRLWLLSGEPSSPDPRSSGQPSSSGDHLRDLINGIQTSDEDLAVSLSKIAEFANISSENRRLLATFPGFESAIVRSLARSKSRIDASEKVISVLDLVFRENGNVTVAGERIRRLILNAREEFFGSFISVLRNGSLESKIETVRVFEFLACDFQSKRSIAETRGLLSLLMSLLKEEKCEGLNDAVLSLLAVVSVTQSVKVELVRSGLVELLSKMLLSPACGGSTAERCLRMLAVAATCAEGREAMVKEPSCAAAVMERMAKAPKAAAEDAVAVLWSLCCLCGNVKVRDDVAKRNGIAVILLVMQRGWHEHVRSMCVDLIKVLKGACRNGLPLALGSYDTKTTHIKPC* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00983 417 SUPERFAMILY RING/U-box 8 73 - -
Rops5g00983 417 FunFam RING-type E3 ubiquitin transferase 12 77 - -
Rops5g00983 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Rops5g00983 417 MobiDBLite consensus disorder prediction 80 101 - -
Rops5g00983 417 Gene3D - 91 405 IPR011989 -
Rops5g00983 417 CDD RING-Ubox_PUB 13 65 IPR045210 -
Rops5g00983 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Rops5g00983 417 Pfam U-box domain 12 72 IPR003613 GO:0004842|GO:0016567
Rops5g00983 417 PANTHER WDSAM1 PROTEIN 11 398 IPR045185 GO:0061630
Rops5g00983 417 MobiDBLite consensus disorder prediction 82 101 - -
Rops5g00983 417 SUPERFAMILY ARM repeat 180 392 IPR016024 -
Rops5g00983 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00983 Rops-Chr5 19272623 19274301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00983 6 416 U-box Gene Family AT5G09800 37.981 1.02e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00983 - - gmx:100786235 548.51