Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00962 ATGGACCCGAAGTTCATCGGAAAACCGTCGGCAACGGTGGACATAGAGCGGATGCCGGAGCGTGGGTCCCACCACCGGAGGTCTCACTCCGACACGTCCTTCCGCTTCGCCGCCAACTTCGACGACCTTCTCCTCTTCGACCCTTCCGACCTCGACATCTCCAACCTCCCTCTCCCGTCGCCGGCTGGCGGTGGAACTGGAGGTGGTGGCGTGGTTCCGATGACAGTCGATTCGGACGAGTCCGGCGGGAGGACTGTGGCGGCGGGTCCACCTTTGGGGCACCAGCGGAGCTTGTCCGTGGACTCAGACTTCTTCGACGGCCTTGCGTTCACCGGCGACGAGAAAATCGGCGGGAAAGGCGCCGGAGAGAGGAGGGTGGGCCACCACCGGCGCAACAATTCGATGGATGGGTCCTCAACGACGTCGTTTGAGGCTGACTCGTCGATGATTGATGGTATGAAGAAAGCTATGGCTCCTGAAAAGCTCGCTGAGCTTGCTCTTATGGATCCCAAGAGAGCTAAGAGGATTCTTGCTAATAGGCAATCAGCTGCACGATCAAAGGAGAGGAAAATTCGTTATACAAATGAGTTGGAGAGGAAGGTGCAAAAACTTCAGACCGAAGCAACTAATCTCTCTGCACAGCTTACCATGCTTCAGAGAGACACTACAGATTTGACTGCTGAGAATAAGGAGCTCAAATTGCGGTTAGAGGCTTTGGAACAAGAAGCACAACTTAGAGAAGATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTCAGGGCACAAAAGAGTCGTTTGACTGCTATGACTGGCAATCCTTCTTTTGGTAGGATGTTCTCCGAGATGGCTTCCCAGTTCGCCATGCAACAGCTGACAAATCCTCCACCCCAGCAACCACAGCCTGGCATGCCTCCGCCTGCTCGTTCTGATCAGCCTTTCAATGGGCAGGGCCACCCTAATTTCATGGACTTCAATCAGCAAAAGTAG 990 0.5455 MDPKFIGKPSATVDIERMPERGSHHRRSHSDTSFRFAANFDDLLLFDPSDLDISNLPLPSPAGGGTGGGGVVPMTVDSDESGGRTVAAGPPLGHQRSLSVDSDFFDGLAFTGDEKIGGKGAGERRVGHHRRNNSMDGSSTTSFEADSSMIDGMKKAMAPEKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELERKVQKLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEALEQEAQLREDLNEALKEELQRLRAQKSRLTAMTGNPSFGRMFSEMASQFAMQQLTNPPPQQPQPGMPPPARSDQPFNGQGHPNFMDFNQQK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00962 329 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 169 232 IPR004827 GO:0003700|GO:0006355
Rops5g00962 329 FunFam Transcription factor VIP1 170 223 - -
Rops5g00962 329 MobiDBLite consensus disorder prediction 1 32 - -
Rops5g00962 329 MobiDBLite consensus disorder prediction 314 329 - -
Rops5g00962 329 CDD bZIP_plant_RF2 172 221 IPR044759 GO:0003700|GO:0006355
Rops5g00962 329 MobiDBLite consensus disorder prediction 57 94 - -
Rops5g00962 329 MobiDBLite consensus disorder prediction 285 329 - -
Rops5g00962 329 Gene3D - 170 244 - -
Rops5g00962 329 MobiDBLite consensus disorder prediction 14 32 - -
Rops5g00962 329 Coils Coil 187 270 - -
Rops5g00962 329 SMART brlzneu 167 231 IPR004827 GO:0003700|GO:0006355
Rops5g00962 329 MobiDBLite consensus disorder prediction 116 143 - -
Rops5g00962 329 SUPERFAMILY Leucine zipper domain 171 223 IPR046347 GO:0003700|GO:0006355
Rops5g00962 329 MobiDBLite consensus disorder prediction 117 132 - -
Rops5g00962 329 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 306 - -
Rops5g00962 329 Pfam bZIP transcription factor 171 229 IPR004827 GO:0003700|GO:0006355
Rops5g00962 329 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00962 Rops-Chr5 18653625 18659832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00962 9 328 bZIP Transcription Factor Family AT1G43700 48.563 1.08e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops5g00962 bZIP_1 3.8e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00962 K20557 - gmx:778142 432.565