Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00959 ATGGCATCCCTCAACCAAGCCATATTTGTCCTTCAAAACAATGACCTTGAGCAACAAGCAACAACTCTAGAGATTGAAGCCAAAGACTATGACTACTCTAAAAGATCTCAATGGCTACGTGCTGCTGTTTTGTGTACCAATGATGGTTTGGTTTCAACTGCATCTCTCATGATGGGTATGGGAGCAGTCAAGCAAGACAGCATGGCCATAGGGGAGTTTGTGTCTGTGTACTCACAGCTGGACATAGGGGTTGCTCAAATGAAGAGAAAGAAGGAAAGGGGAAGTGGTAGAGGTAGAGAAGATGAAGATGAAGATGTTGAAGAGAAAGAAAGTTTGCCAAACCCTTTACAAGCAGCTGCAGCCTCAGCTTTGGCCTTTGGTGTTGGTGCAATGGTACCATTGCTTGCAGCCTCCTTTATAAGGGAACATAAGGTGAGGATTGGAGTGGTTGTAGCTGCAGTGAGCTTTGCTTTGGTGGTTTTTGGTTGGATCAACCTCCATTCTGAAAGTGAACATGAGAAGGAGGAAAGGAGAAATAAGAGGGAAAGGATCCTGGTTGAGAAAGCAGAAGCCAAAGCAATCAACGCTATCGAGGAAAAAGAGAATATGGTGGCCAAATCAGATGGGGAGAAGCAAAGTGTCGAGAAAGTACTTGAGAAACAAGCTAGACAACAAGCCGCATTAGGTGCCCCTGGGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGCAGATAAGGACTAAGGACAGAGCACAACTGGTTTTAAATCTGCAGGGAGAACGAAATTTTAACTGGTTTGGTGGGTGGCTGGGGAAGAACTTGACAATGGGCAAAAACATGAGGCTTTTGGATGACCTGCATGTTCACATTCTTGCATCTCATGATGTTGAAGCAGAAGCAAACTCCTACTTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCATTGGTGCAAATGCTTGCCCGATTCAAGGAATCTTCTGTTGAGAGTTCAGTTAGGAGTGGGTACGAGTCTATTGTGATGCATGATCTCACGCATGATTTAAAAACTTCCCTTGGTGGAGAATTCTACCTCAAATCTGAAGAACTTGGAAAAGAAACCAAGATTAGTAGCAAGACTTGTCATTTGTCATCCAGGGAATTTAATCCTTCAATCTTAGAAAACTTTGAAGTCTTTGATAGAGTAAAATTTCTGAGAACACTCTTGTACGAGCTGGATCATTCTTTTGATCCATATATCATGATATCAAAGCTCAAGCACGAGGAGAATGGGATCAAGGAATTGGGAGGGCTACCAAATGTGAATGATTGGCATATGGTTCATATGTTGGAAGAAACAGTGGAAAGGCTGGAGTTTATCCTGAAACTCAAAGAGAGAATTGTTCTCAAGGAGAATCCAATGGGGAACTTTTCATTTAGGCCTGCGTCAATATCTCTGTTAGATAGTTCAGTTAGAAGCGGGTACGAGTCTATTGTGATGCATGATCTCACGCATGATTTAGCAACTTCCTTTGGTGGAGAATTCTACCTCGGATATGAAGAACTTGGAAAAGAAACCAAGATTAGTAGCAAGACTCGCCATTTGTCATCCAGGGAATTCAATCCTTCAATCTTGGAAAACTTTGAAGTCTTTGATCGAGTAAAATTTCTGAGAACACTCTTGTTAGAGCTAGATCATTCTGTTGATCTATATATCATGATATCAAAGCTCAAATCTAAAAGACTTGGAAAAGAAACCAAGATTAGTAGCCAGACTCGTCATTTGTCATCCAGGGAATTCAATCCTTCAATCTTGGAAAACTTTGAAGTCTTTGATCGAGTAAAATTTCTGAGACCACTCTTGTTAGAGCTAGATCATTCTGTTGATCCAGATGTGGATCCATATATCATGATATCAAAGCTCAAGCACGAGGAGAATGGGATCAAGGAATTAAGAGGGCTACCAAATCTTCTTAGAACAAATTCAATTCTTGAATTGCAAAATGTTATCGACAGTAGTGAAGCATTGAAAGTAAGAATAATGGATAAGAAGCATCTTGGCGGATTATGGTTACACTGGGAAACACTAGGTTTTTATAAGGATGGTGATTCTTCTGATATGACACCCTTTCCCTCCCTTGAATATCTAGAATTTTTAGGCATGGATTGTTGGGAGGTGTGGAGTTCGTTTGAGTCAGATGCTTTTCCTCAACTTAAGCATCTAGTATTAAAATCTTGTCCCAAATTAAGGGGAGATTTGCCAACTCACCTTCCTGCTTTGGAAAAACTTAAGATTATGGATTGTGAGCAACTTGCCTCTTCTTTTCCAAGGTCTCCTGCCATTCACAAATTAGAGATACATAACAATAGTAAAGTAATATTGCAGGAGTTACCTCTTTCAATAGAGAATTTAAACATTGGTGAAAGTCCATTGGTGGATTCAGATCTGAGGTGGAATTCTCCACGAAGGGAAGTTGCTTAA 2472 0.4049 MASLNQAIFVLQNNDLEQQATTLEIEAKDYDYSKRSQWLRAAVLCTNDGLVSTASLMMGMGAVKQDSMAIGEFVSVYSQLDIGVAQMKRKKERGSGRGREDEDEDVEEKESLPNPLQAAAASALAFGVGAMVPLLAASFIREHKVRIGVVVAAVSFALVVFGWINLHSESEHEKEERRNKRERILVEKAEAKAINAIEEKENMVAKSDGEKQSVEKVLEKQARQQAALGAPGDGIMTAELLERLYLQIRTKDRAQLVLNLQGERNFNWFGGWLGKNLTMGKNMRLLDDLHVHILASHDVEAEANSYFHQMFSDQLTINALVQMLARFKESSVESSVRSGYESIVMHDLTHDLKTSLGGEFYLKSEELGKETKISSKTCHLSSREFNPSILENFEVFDRVKFLRTLLYELDHSFDPYIMISKLKHEENGIKELGGLPNVNDWHMVHMLEETVERLEFILKLKERIVLKENPMGNFSFRPASISLLDSSVRSGYESIVMHDLTHDLATSFGGEFYLGYEELGKETKISSKTRHLSSREFNPSILENFEVFDRVKFLRTLLLELDHSVDLYIMISKLKSKRLGKETKISSQTRHLSSREFNPSILENFEVFDRVKFLRPLLLELDHSVDPDVDPYIMISKLKHEENGIKELRGLPNLLRTNSILELQNVIDSSEALKVRIMDKKHLGGLWLHWETLGFYKDGDSSDMTPFPSLEYLEFLGMDCWEVWSSFESDAFPQLKHLVLKSCPKLRGDLPTHLPALEKLKIMDCEQLASSFPRSPAIHKLEIHNNSKVILQELPLSIENLNIGESPLVDSDLRWNSPRREVA* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00959 823 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 295 333 IPR032193 -
Rops5g00959 823 Gene3D Ribonuclease Inhibitor 692 817 IPR032675 -
Rops5g00959 823 SUPERFAMILY RNI-like 662 801 - -
Rops5g00959 823 Pfam VIT family 102 164 IPR008217 GO:0005384|GO:0030026
Rops5g00959 823 MobiDBLite consensus disorder prediction 88 113 - -
Rops5g00959 823 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 18 167 IPR008217 GO:0005384|GO:0030026
Rops5g00959 823 Coils Coil 172 206 - -
Rops5g00959 823 Gene3D - 292 367 IPR038535 -
Rops5g00959 823 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00959 Rops-Chr5 18515135 18541754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00959 13 164 Nodulin-like Gene Family AT3G43660 58.235 1.72e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00959 K22736 - zju:107406772 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00959 5 18515135 18541754 Rops6g02613 6 46917902 46918870 PCT