Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g00954 | ATGGTATCAAAAAACCCGAACCCGCCGGAAGGGTTCCGCTTGGATCCGAGTGGCATGGCTCTACCGGGTCTCAGCCCGTTCGCCTCTGTCTCCGCCGCGACAGCTCCGGCGGCTTCCGCCACGAACTCGTCGGAGGATGCCGCCAAGAAAATACGGAAGCCTTACACTATTACGAAGTCAAGGGAGAATTGGACCGAACCCGAACATGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTATTGGATCAAAGACTGTTATACAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGGCAAATGAGCATCTTCCTCCACCCAGGCCTAAAAGAAAGGCTGCCCATCCATACCCTCAAAAAGCTTCCAAAAATGCTCCTGTACTCTCAAAAGTATCAGGATCATTTCAATCTTCGTCTGCTTTTGAACCTGGATATATCCTGAAGCATGAATCCTTACCAATGCATAAAACTCCTGTTATGAACACTGTGGTGTCTTCCTTGTCAAACCACACCTTGCAAACGACCGATTTATTGCATGCGCCAAAAGTGAATAATTCTTGCAGTAGCAGTGAAAGCACTCCTAAAGTGCGGCCAATTGGTGAATCTAATGGTCAAGGGAATAATAGCCATCCATTGAGAGTTCTTCCAGATTTTTCTCAGGTATACGGCTTCATTGGCAGTGTATTTGACCCAGATGCAACTGAGCATCTGCAGAAACTTAAAAAGATGGACCGAATAGATGTTGAGACGGTGCTACTGTTGATGAGAAACCTGTCTATCAATTTAACAAGCCCAGATTTTGAGGATCATAGAAAGCTGCTTTCATCATATGATGTTGAACTGGAGACAAATAACTATATCAATGTAGATAGACCCATGCACGATGAGCAGTTGCAGAGTGCTACGTAG | 951 | 0.4522 | MVSKNPNPPEGFRLDPSGMALPGLSPFASVSAATAPAASATNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKNAPVLSKVSGSFQSSSAFEPGYILKHESLPMHKTPVMNTVVSSLSNHTLQTTDLLHAPKVNNSCSSSESTPKVRPIGESNGQGNNSHPLRVLPDFSQVYGFIGSVFDPDATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYDVELETNNYINVDRPMHDEQLQSAT* | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g00954 | 316 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 59 | 108 | IPR006447 | GO:0003677 | |
Rops5g00954 | 316 | Gene3D | - | 63 | 111 | - | - | |
Rops5g00954 | 316 | Pfam | Myb-like DNA-binding domain | 61 | 106 | IPR001005 | - | |
Rops5g00954 | 316 | MobiDBLite | consensus disorder prediction | 196 | 224 | - | - | |
Rops5g00954 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 56 | 110 | IPR017930 | - | |
Rops5g00954 | 316 | CDD | SANT | 63 | 106 | IPR001005 | - | |
Rops5g00954 | 316 | SUPERFAMILY | Homeodomain-like | 55 | 111 | IPR009057 | - | |
Rops5g00954 | 316 | ProSiteProfiles | SANT domain profile. | 59 | 110 | IPR017884 | - | |
Rops5g00954 | 316 | SMART | sant | 60 | 108 | IPR001005 | - | |
Rops5g00954 | 316 | MobiDBLite | consensus disorder prediction | 111 | 139 | - | - | |
Rops5g00954 | 316 | ProSiteProfiles | Myb-like domain profile. | 56 | 106 | IPR001005 | - | |
Rops5g00954 | 316 | FunFam | protein REVEILLE 6 isoform X1 | 63 | 111 | - | - | |
Rops5g00954 | 316 | PANTHER | SWI/SNF COMPLEX-RELATED | 36 | 277 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g00954 | Rops-Chr5 | 18458845 | 18467025 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Rops5g00954 | Myb_DNA-binding | 8e-10 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g00954 | - | - | gmx:778054 | 471.47 |