Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00954 ATGGTATCAAAAAACCCGAACCCGCCGGAAGGGTTCCGCTTGGATCCGAGTGGCATGGCTCTACCGGGTCTCAGCCCGTTCGCCTCTGTCTCCGCCGCGACAGCTCCGGCGGCTTCCGCCACGAACTCGTCGGAGGATGCCGCCAAGAAAATACGGAAGCCTTACACTATTACGAAGTCAAGGGAGAATTGGACCGAACCCGAACATGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTATTGGATCAAAGACTGTTATACAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGGCAAATGAGCATCTTCCTCCACCCAGGCCTAAAAGAAAGGCTGCCCATCCATACCCTCAAAAAGCTTCCAAAAATGCTCCTGTACTCTCAAAAGTATCAGGATCATTTCAATCTTCGTCTGCTTTTGAACCTGGATATATCCTGAAGCATGAATCCTTACCAATGCATAAAACTCCTGTTATGAACACTGTGGTGTCTTCCTTGTCAAACCACACCTTGCAAACGACCGATTTATTGCATGCGCCAAAAGTGAATAATTCTTGCAGTAGCAGTGAAAGCACTCCTAAAGTGCGGCCAATTGGTGAATCTAATGGTCAAGGGAATAATAGCCATCCATTGAGAGTTCTTCCAGATTTTTCTCAGGTATACGGCTTCATTGGCAGTGTATTTGACCCAGATGCAACTGAGCATCTGCAGAAACTTAAAAAGATGGACCGAATAGATGTTGAGACGGTGCTACTGTTGATGAGAAACCTGTCTATCAATTTAACAAGCCCAGATTTTGAGGATCATAGAAAGCTGCTTTCATCATATGATGTTGAACTGGAGACAAATAACTATATCAATGTAGATAGACCCATGCACGATGAGCAGTTGCAGAGTGCTACGTAG 951 0.4522 MVSKNPNPPEGFRLDPSGMALPGLSPFASVSAATAPAASATNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKNAPVLSKVSGSFQSSSAFEPGYILKHESLPMHKTPVMNTVVSSLSNHTLQTTDLLHAPKVNNSCSSSESTPKVRPIGESNGQGNNSHPLRVLPDFSQVYGFIGSVFDPDATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYDVELETNNYINVDRPMHDEQLQSAT* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00954 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Rops5g00954 316 Gene3D - 63 111 - -
Rops5g00954 316 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Rops5g00954 316 MobiDBLite consensus disorder prediction 196 224 - -
Rops5g00954 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Rops5g00954 316 CDD SANT 63 106 IPR001005 -
Rops5g00954 316 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Rops5g00954 316 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Rops5g00954 316 SMART sant 60 108 IPR001005 -
Rops5g00954 316 MobiDBLite consensus disorder prediction 111 139 - -
Rops5g00954 316 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Rops5g00954 316 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Rops5g00954 316 PANTHER SWI/SNF COMPLEX-RELATED 36 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00954 Rops-Chr5 18458845 18467025 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops5g00954 Myb_DNA-binding 8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00954 - - gmx:778054 471.47