Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00950 ATGGCGGCAGGACTCTCCGCCACCATAACCTTAAAGCCCCTCTTCCGTGTCCACAAGCAACCCTTGTTACCCTTCTTCCCCAAGCCAAACTCAACACTACTCTTCTCTCCTTTGAGATGTCACCGTCTCAGCACAACCCCTCGAACCCAAAGAATGACAAGCTTCACCGTTTGTGTCCTAATGGAGGATCCAAAACATAGCGCCACCCACATGGAAACTGAGCCAGAAGAACCTTCCCCTCAAGTGAATCACCCTCAACTTTTGTCACCACAATTGGCAGAGAAATTGGCCAGAAAAAGGTCAGAGAGGTTCACTTACCTTGTTGCAGCAGTGATGTCTAGCTTTGGCATCACATCCATGGCAGTTTTATCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTGGAGAAGTTCCCTGGTCTGAAATGTTTGGCACATTTGCTCTATCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAATGCTCTTTGGCATGCTTCCTTGTGGCACATGCATGAGTCCCACCATCGTCCAAGAGAAGGACCCTTCGAGCTGAACGATGTTTTTGCAATTATCAACGCTGTCCCTGCCATTGGTCTCCTTTCCTATGGTTTCTTCCACAAGGGACTGGTCCCTGGTCTTTGCTTTGGAGCAGGTCTTGGAATTACTGTCTTTGGGATGGCCTACATGTTTGTACATGATGGTTTGGTTCACAGGAGATTCCCAGTGGGCCCCATTGCCGATGTGCCCTACTTTAGGAGGGTAGCTGCTGCTCACAAACTTCACCATTCGGACAAATTCAATGGGGTGCCATATGGGCTGTTTTTGGGACCAAAGGAAGTTGAAGAGGTGGGAGGACTAGAAGAGCTAGAGAAAGAGATAAATAGGAGAGCAAGATCATACAATAGCTCGTGA 930 0.4839 MAAGLSATITLKPLFRVHKQPLLPFFPKPNSTLLFSPLRCHRLSTTPRTQRMTSFTVCVLMEDPKHSATHMETEPEEPSPQVNHPQLLSPQLAEKLARKRSERFTYLVAAVMSSFGITSMAVLSVYYRFSWQMEGGEVPWSEMFGTFALSVGAAVGMEFWARWAHNALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIGLLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIADVPYFRRVAAAHKLHHSDKFNGVPYGLFLGPKEVEEVGGLEELEKEINRRARSYNSS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00950 309 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 306 IPR045019 GO:0016491
Rops5g00950 309 Pfam Fatty acid hydroxylase 153 280 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00950 Rops-Chr5 18334604 18336891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00950 1 223 Chloroplast and Mitochondria Gene Families AT4G25700 61.947 5.74e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00950 K15746 - gmx:100785541 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00950 5 18334604 18336891 Rops6g02688 6 48258229 48260908 ECH
Rops5g00950 5 18334604 18336891 Rops5g00950 5 18334604 18336891 ECH
Rops5g00950 5 18334604 18336891 Rops6g02688 6 48258229 48260908 PCT