Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00945 ATGGATCCTAATGGTTTTGTGGATGATAAGTCTGAAAATAGACTCTATATCGGTAACCTTGATCTCAGAATTACAGAAGCTGCATTGCTTAAAATGTTTTCCCCTTTTGGAAAGATCATTTCTGAGGACTTCTTATGGCACACGCGTGGCCCGAAACGCGGGGAGCCACGTGGATTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCAGAATTGGCCAAGGAGAAGATGCATGGGAAGTTAGCTTGTGGAAGGCCATTGGTTGTTCGTCTTGCTTGTGAGAAGTACATGTTGGAAACTACTGATAATGCAAAAGCAGCAGGTGAAGGGCACAACAAGATGCATCATCTCACTGGTGGTGGCATGGGACAAACAAGTCGTGGTGCAAAAATTGCTGCAATAAAGAACAAATTGAAATCTTTAGAGGAGGAGAGTTCTGGGAACAAGAAGCAGAAGCAAACTGACAATACTTCTTGA 477 0.4319 MDPNGFVDDKSENRLYIGNLDLRITEAALLKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGKLACGRPLVVRLACEKYMLETTDNAKAAGEGHNKMHHLTGGGMGQTSRGAKIAAIKNKLKSLEEESSGNKKQKQTDNTS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00945 158 MobiDBLite consensus disorder prediction 136 150 - -
Rops5g00945 158 Coils Coil 131 151 - -
Rops5g00945 158 CDD RRM_RBM18 14 92 IPR039157 -
Rops5g00945 158 MobiDBLite consensus disorder prediction 135 158 - -
Rops5g00945 158 SUPERFAMILY RNA-binding domain, RBD 9 110 IPR035979 GO:0003676
Rops5g00945 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 146 - -
Rops5g00945 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Rops5g00945 158 SMART rrm1_1 14 90 IPR000504 GO:0003723
Rops5g00945 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Rops5g00945 158 Gene3D - 7 132 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00945 13 95 Eukaryotic Initiation Factors Gene Family AT3G16380 34.940 9.26e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00945 K24527 - gmx:100804800 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00945 5 18266964 18268331 Rops5g00945 5 18266964 18268331 ECH