Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00938 ATGTCGTCGCCGGGATTCACTGGCGGTGGTGGAGCATCGGAGTTTTTCACCGGCAGATCCATTCCCACGGCGACAGCCACCATGAACAACCCCACCACCACCAACAACAACCTTCATCATCCCTCTCTCTACCGAACTCAACAGCATCTTCCTCCAATTTTTCTAGATCCTTCTTCACAACAACGTCAAACACCAACAACAACCTTCATGGGTAAGCGCACTTTAGCTGAATTCCAAACCCAACAACAACAAAACCAAACCTTTCACAATAACAACAACCTTAACCATAATCATGTTCTCTCAAACCTTCTTCTTCGTTCTGTTAAACCCAGAACAATTTATCATCACCAATCTTTGTCTCCTTTATCTCCTTTGTCTCATGTTTCACCAGTTGATTATTCTGAATTGAGAAACCCTTTGGGTGGGTTTCAAACGCAGCGTTTTGGTGTTCCACTTCTTCATCAACTTCATCCTCAACCTATTAACCTCCGCAACAACGGAACCTTACCCATGACAACAAACCCAACAAACCCGATCCTTCAGAATAATATTCAATACAGAAACTTAAATTCGGGTCAGGCACCGAACCGGGTTCAGGGTTCTGAACCGGAAAAGAAGATCATGGACCATAGGCTTCAAGAGTTAGAAAAGCAGCTTCTAGAAGATAACGATGAAGAAGGTGAAGCTGATGCAGTGTCTGTGATAACAACTAGTGAGTGGTCAGAGACATATCAGAATTTGATAAACCCGGGTCCGACCCAGAAACCCGTTTCTTCATCACCCACTTCTTCAACGACGTCGTCTACGTCCTCTTCTTCTTCTGCAGCTTCACCTGCCTCAGGGTGTTCTAAACAGAGTTTAATAGAAGCCGCATCTGCAATTGCCGAAGGGAAAAACGACGTCGCAACGGAGATCTTAACCCGTTTGACACAGGGTCCGAACCCAAACCCGAATTTGAATTCGGATCAGAGGTTAACCGATTGCATGGTTTCGGCTTTGAAATCGAGGATGAACCCGGTGGAAAATCCACCACCTGTGGTGGAACTTTTCAGCAAGGAACACGCTGAGTCGACTCAGTTGCTTCTTGAAAACTCGGTATGTTTCAAGGTTGGGTTCATGGCTGCGAATCTCGCGATTCTAGAAGCAGCATTTGAGGAGAAAGTTGAGAATTTGAACGGAAAAGGGTTCTGTGTGGTGGATTTTGACATTGGAAACGGGAAACGGTACAAGAACCTTCTTCACGCGCTCTCGGCGCGTTGCCAGAACGGGAAGGTTTCGCTTTCGCCGCCGGTGAAGATCGTTGCCGTGGTGGAGAATGGCGGCGAGGAGAGGATAAAGGTTGTCGGAGAGATGCTGAGTCGACAAGCGGAGACGTTAAGAATCGGGTTCGAGTTCAAAATGGTATCATTGACTCAGAAACTCGCTGAGTTAACTCGCGAGTCGTTAGGTTGTGACTCGGATGAGAATCTTGTTGTGAACTTCGCGTTTAAACTGAACAAGATCCCCGACGAGAGTGTCTCGACGGAGAACCCACGTGACGAGCTTTTACGGCGCGTGAAGAAACTCGCGCCTCGCGTGGTGACAATTGTGGAGCAAGAGATGAACACCAATACGGCGCCGTTTTTGGCTCGTGTGTCCGAGTCATGGTCTTATTACAGTGCTTTATTTGACTCGGTTGAGTCCGTGTTGGGAAGGGATAACCGGGACCGAGTCAAGGTGGAGGAGGGACTGAGTCGGAAGCTTTGCAACTCGGTGGCATGTGAAGGGAGGGATCGCGTTGAACGTTGTGAAGTGTTTGGGAAATGGCGCGCAAGAATGAGCATGGCGGGGTTCCAGTTAAAACCACTGAGTCAAAGCGTTACCGAGTCAATAAAATCGCGACTCCCCATGGGTAACAACAACCGAGTCATCCCGGGACTCAGTGTTAAAGAAGAGAATGGTGGGATTTGCTTTAGTTGGATGGGAAGAACACTCGCGGTCGCATCTGCTTGGCGTTAA 1998 0.4805 MSSPGFTGGGGASEFFTGRSIPTATATMNNPTTTNNNLHHPSLYRTQQHLPPIFLDPSSQQRQTPTTTFMGKRTLAEFQTQQQQNQTFHNNNNLNHNHVLSNLLLRSVKPRTIYHHQSLSPLSPLSHVSPVDYSELRNPLGGFQTQRFGVPLLHQLHPQPINLRNNGTLPMTTNPTNPILQNNIQYRNLNSGQAPNRVQGSEPEKKIMDHRLQELEKQLLEDNDEEGEADAVSVITTSEWSETYQNLINPGPTQKPVSSSPTSSTTSSTSSSSSAASPASGCSKQSLIEAASAIAEGKNDVATEILTRLTQGPNPNPNLNSDQRLTDCMVSALKSRMNPVENPPPVVELFSKEHAESTQLLLENSVCFKVGFMAANLAILEAAFEEKVENLNGKGFCVVDFDIGNGKRYKNLLHALSARCQNGKVSLSPPVKIVAVVENGGEERIKVVGEMLSRQAETLRIGFEFKMVSLTQKLAELTRESLGCDSDENLVVNFAFKLNKIPDESVSTENPRDELLRRVKKLAPRVVTIVEQEMNTNTAPFLARVSESWSYYSALFDSVESVLGRDNRDRVKVEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQSVTESIKSRLPMGNNNRVIPGLSVKEENGGICFSWMGRTLAVASAWR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00938 665 ProSiteProfiles GRAS family profile. 274 665 IPR005202 -
Rops5g00938 665 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 255 633 IPR005202 -
Rops5g00938 665 Coils Coil 205 225 - -
Rops5g00938 665 MobiDBLite consensus disorder prediction 245 281 - -
Rops5g00938 665 Pfam GRAS domain family 284 665 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00938 Rops-Chr5 18185715 18188094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00938 29 665 GRAS Transcription Factor Family AT5G52510 50.076 8.58e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops5g00938 GRAS 9.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00938 - - gmx:100788551 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00938 5 18185715 18188094 Rops5g00938 5 18185715 18188094 ECH
Rops5g00938 5 18185715 18188094 Rops6g02703 6 48627971 48630187 PCT