Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00923 ATGGCAGGTGAGGTGGTGAAGAAGGAAGAATCTCTGAATCTGAAATTCACTGGCAAAAGCAATGTGAAACCAAAGGAGAAAGTAGGGGAAAAAGAGTGTCAATTGGTCACTTTTGATCTTCCCTACCTAGCTTTTTACTACAACCAAAAGCTAATATTTTACAAAGGGGATGATTTTGATGGTATGGTTAAGAAACTGAAAGATGGGCTTGGTGTAGTCCTAAAGGAGTTTCATCAACTAGCTGGTAAGATAGGGAAAGATGAGGAGGGTGTGTTTAGGGTGGAATATGATGATGACATGCCTGGTGTGGAGGTCACAGAAGCTGTTGCTGATGAGGTTAGTGTGGAAGATCTCACTGTGGCAGAAAGTACCAGCATCTTGAAGGAGCTGATACCTTATAATGACATCTTGAATTTGGAAGGCATGCACAGGCCCTTGTTGGCAGTTCAGTTAACTAAGCTCAAAGATGGGCTTGCAATGGGTTTGGCGTTCAACCATGCAGTCTTGGACGGTACTTCCACGTGGCACTTCATGAGTTCATGGGCCGAGGTCTGCATTGGTGCACCCTCCACAACAGTCCAACCTTTCCTCGAAAGGACCAAGGCCCGAAACACAAAGGTGAAGCTTGACCTCTCATTGCCCGAGCCCAACGGGCCACCCGTTGCATCTAATGGTGAGGCAAAGCCCGAGCCCGTACTTAGGGAAAAGATCTTTAAGTTCTCCGAGTCAGCAATAGATAAGATCAAGTCAATGGTTAACAAAACCCCACCATTAGACGATTCAAAACCATTCTCAACATTTCAAGCTCTCTCCACTCATGTTTGGCGTCATGTGACCCATGCACGTAACCTAAAACCCGAAGATTACACTGTGTTCACGGTCTTTGTTGATTGTCGGAGAAGGGTAGACCCGCCGATGCCAGAGACTTATTTCGGAAACCTAATTCAGGCCATATTCACGGTCACAGCCGCCGGGCTTTTGTTAGCCCATCCACCACAATTCAGTGCTTCTTTGATCCAAAAGGTAATTGAAGCCCATGATGCTAAAGCTATTGATGAAAGAAACAAAGAATGGGAGAATGCACCCAAGATTTTTCAATTCAAAGATGCTGGGGTGAATTGTGTGGCAGTGGGAAGCTCACCAAGGTTTAAGGTTTATGACATTGATTTTGGATGGGGGAAGCCTGAGAATGTGAGGAGTGGGACTAATAATAAGTTTGATGGGATGATTTATTTGTATCCAGGGAAGAGTGGAGGGAGGAGCATTGATGTGGAATTAACCTTGGAGTCTGAGGCTATGGGAAGGTTGGAGCAAGACAAGGAATTTCTTATGGAGGTATAA 1341 0.4519 MAGEVVKKEESLNLKFTGKSNVKPKEKVGEKECQLVTFDLPYLAFYYNQKLIFYKGDDFDGMVKKLKDGLGVVLKEFHQLAGKIGKDEEGVFRVEYDDDMPGVEVTEAVADEVSVEDLTVAESTSILKELIPYNDILNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEVCIGAPSTTVQPFLERTKARNTKVKLDLSLPEPNGPPVASNGEAKPEPVLREKIFKFSESAIDKIKSMVNKTPPLDDSKPFSTFQALSTHVWRHVTHARNLKPEDYTVFTVFVDCRRRVDPPMPETYFGNLIQAIFTVTAAGLLLAHPPQFSASLIQKVIEAHDAKAIDERNKEWENAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKPENVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLESEAMGRLEQDKEFLMEV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00923 446 Gene3D - 11 211 IPR023213 -
Rops5g00923 446 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 19 443 - -
Rops5g00923 446 Pfam Transferase family 14 442 - -
Rops5g00923 446 FunFam Tryptamine hydroxycinnamoyl transferase 220 440 - -
Rops5g00923 446 Gene3D - 220 439 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00923 Rops-Chr5 17907484 17910895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00923 46 446 Monolignol Biosynthesis Gene Families AT5G48930 28.271 3.98e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00923 K19747 - gmx:100818158 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00923 5 17907484 17910895 Rops5g00923 5 17907484 17910895 ECH