Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00911 ATGTCTCTCTCTCTCTCTTTCTTCCTCCTCTCCAAACCTCCTTGGTTGATCGCTTTCTCTTCTTTTCTCGCCGATTTTCCTTCCCGCCAAACACTCCCTCTTCCCTTCGCCGCCGTCGCTTCTCATTCCTCCGAGATTCTACTCCTTCTCCCGACCATCTCTTCCTCCTCATTTCTATCAGATGCCATGTCAATTGCAAAACTCAAGGCGTCTAGCTCTCCAGATGTCATGAAAACAGAAGACAGAATAGATACCATAATCAGACAAGCAATTGGCCAAGAACCTTTGCTTTATTTTCCAAGGGCCAGTGAGAACCCTGTACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGGTGTTAGCAATTCTTATTCAGAACTTCCAGGGTGGCCTTTGCTCTTTCCTCTAAAGATTCAGGTGCAGAAGTGTGACAAGTGTTCTCAAGAGTTTTGCTCCCCCATTAACTTTAGAAGACATATACGTGTCCACCACCGGTTGAAAAAGCTTGATCAGGATACAAAAACTAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTGTGGAAGAGGCAAAGGAAATTGTATCATTTGAAGATGTGATGCTGGAGGAAGTTCCGGGCTCTTCGGTTTTGAATGGTCTGATGAATCTTATTCAAAAACATGGATTTTGTTTACTTCCGCATTATTATCTGAGGGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTAAACCTTCCAGTTTTCCTATATCTTCCCAGGAGTTATTCAGTATCCTTGATGATGCTAGTGAAAAAACATTTTTATGGGGGACAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAAGTTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAGAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCAGAGATTTTGGAGAGGAAACGCAAGAAAAAGCTGAGACAAAAAGAACAGAAGGCTAGGGAACAAAGACACAAGGATGGGGCAGAAAATAAAGGGAATATTGACAGTACAGTAAAGGCTTTATCACCAGCAGAAGCATCTTTGGATATATGTAATTTTGAAGCTCATAATCCAGATACATTTGCAGATAACACTACTTCACATGTACCTTTCCAGTGCCCTGACACTAATGGAGGAATAGATGGGGATACTCAGTCAGGGCATGATTTTGGCACTGATCAGAATATTGAGAGACAGTCGGCACATGGATGTAATCATCAGCACAGATGGCAGGGGCTGCCAAAATCACAGAGGGCTGTAGCCAATGGTTTGCGTACAAATCAGAATTCTCCTATTTCAAAACCTGAAGTCATGCAGAAATATGGAACCCCCCATGATCAAAAAGCAGCTGCTATAGTTAATGGTAGTGAAGCATGGAGTCCAAAGCCTAAACCAGAAATTGACAGGGTGGTTTTAAAAACCACAGTAGAGAAAGAACCAGACCTTGCTAAGAATCATAAAGTTTTGATAGGATCTATATCTGTTAATGTTGGCAATTGCAGCCAATCAGAGGGTAATGTGGTGGCATCTCAAGAGGACTGCATGGTTGAGAATGTGGCCAAGCAGAATAGTTCTCAGGATAAACCAATGAAACCTGATTTGGACATGAGTGGCAACAATCGTTTAGCAGTTAAGCTAGGGCAGCCAGTTAATCGGCTTGAAGTTAAAGATCCATTTCCAGTTCAAAGTGGTCAGACAGAAGTTAATGCAGTTAATGGAAATGGAGATTGTCAAAACTTGTCAGGTCCAAGTAGTTCAAGGTTGTGTGGTATTGATGGTAGTGATGTTGGTTTTGAAAACAATATCTCCCATCTAGAGGGCAGAGTGGATCCAGGAAGCTTACGGTTTTCCAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCAGATCATGTGAAATTGGTTGTTTCCCTTGACTCTGAACCTTCTGAGTGCCAAGAGATACAGGATTTTAAAATAGCAGCATGTCAATCTCCTGATGTGGACAAATGCAACATTCTCCCAAATGCAGAGAACAGGTTGCCTGCAACCTCCGGAGTTTCTAAATCCAAACCCAAAATGAAGTCTGAAAAGGGAGCCAAGAAAAAGTATATTCCCAAACAGAAAACAACTACCTAA 2247 0.4237 MSLSLSFFLLSKPPWLIAFSSFLADFPSRQTLPLPFAAVASHSSEILLLLPTISSSSFLSDAMSIAKLKASSSPDVMKTEDRIDTIIRQAIGQEPLLYFPRASENPVQWIQLLHALDQQGVSNSYSELPGWPLLFPLKIQVQKCDKCSQEFCSPINFRRHIRVHHRLKKLDQDTKTRDLLGAYWDKLSVEEAKEIVSFEDVMLEEVPGSSVLNGLMNLIQKHGFCLLPHYYLRAGAALLDIVQSKPSSFPISSQELFSILDDASEKTFLWGTAVSMQRYVFDGEAGKVGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILERKRKKKLRQKEQKAREQRHKDGAENKGNIDSTVKALSPAEASLDICNFEAHNPDTFADNTTSHVPFQCPDTNGGIDGDTQSGHDFGTDQNIERQSAHGCNHQHRWQGLPKSQRAVANGLRTNQNSPISKPEVMQKYGTPHDQKAAAIVNGSEAWSPKPKPEIDRVVLKTTVEKEPDLAKNHKVLIGSISVNVGNCSQSEGNVVASQEDCMVENVAKQNSSQDKPMKPDLDMSGNNRLAVKLGQPVNRLEVKDPFPVQSGQTEVNAVNGNGDCQNLSGPSSSRLCGIDGSDVGFENNISHLEGRVDPGSLRFSSHAAKAFLAQRWKEAISSDHVKLVVSLDSEPSECQEIQDFKIAACQSPDVDKCNILPNAENRLPATSGVSKSKPKMKSEKGAKKKYIPKQKTTT* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00911 748 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Rops5g00911 748 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Rops5g00911 748 MobiDBLite consensus disorder prediction 710 748 - -
Rops5g00911 748 MobiDBLite consensus disorder prediction 342 372 - -
Rops5g00911 748 Coils Coil 317 358 - -
Rops5g00911 748 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 63 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00911 Rops-Chr5 17598039 17607182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00911 81 745 C2H2 Transcription Factor Family AT4G25610 41.481 1.96e-141 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops5g00911 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00911 - - gmx:100809067 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00911 5 17598039 17607182 Rops5g00911 5 17598039 17607182 ECH
Rops5g00911 5 17598039 17607182 Rops6g02718 6 48868623 48875073 PCT